Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Detalhes bibliográficos
Autor(a) principal: Cleemput, Sara
Data de Publicação: 2020
Outros Autores: Dumon, Wim, Fonseca, Vagner, Karim, Wasim Abdool, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, Oliveira, Tulio de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/40347
Resumo: Devido a pandemia mundial do COVID-19, o artigo da revista foi liberado em acesso aberto durante o ano de 2020, visando divulgação e disseminação.
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spelling Cleemput, SaraDumon, WimFonseca, VagnerKarim, Wasim AbdoolGiovanetti, MartaAlcantara, Luiz CarlosDeforche, KoenOliveira, Tulio de2020-03-17T13:30:12Z2020-03-17T13:30:12Z2020CLEEMPUT, Sara et al. Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. Bioinformatics, btaa145, p. 1-4, Feb. 2020.1460-2059https://www.arca.fiocruz.br/handle/icict/4034710.1093/bioinformatics/btaa145Devido a pandemia mundial do COVID-19, o artigo da revista foi liberado em acesso aberto durante o ano de 2020, visando divulgação e disseminação.Em decorrência da pandemia decretada pela OMS em 2020, o artigo encontra-se em acesso aberto.Emweb bv, Herent, Belgium.Emweb bv, Herent, Belgium.KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP). School of Laboratory Medicine and Medical Sciences. University of KwaZulu-Natal. College of Health Sciences. Durban, South Africa / Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Laboratório de Genética Celular e Molecular Belo Horizonte, MG, Brasil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Coordenação Geral dos Laboratórios de Saúde Pública. Brasília, DF, Brasil.KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP). School of Laboratory Medicine and Medical Sciences. University of KwaZulu-Natal. College of Health Sciences. Durban, South Africa.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil.Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Laboratório de Genética Celular e Molecular Belo Horizonte, MG, Brasil / Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Laboratório de Genética Celular e Molecular Belo Horizonte, MG, Brasil / Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil.Emweb bv, Herent, Belgium.KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP). School of Laboratory Medicine and Medical Sciences. University of KwaZulu-Natal. College of Health Sciences. Durban, South Africa / Centre for the AIDS Programme of Research in South Africa (CAPRISA). Durban, South Africa / University of Washington. Department of Global Health. Seattle, USA.Genome Detective is a web-based, user-friendly software application to quickly and accurately assemble all known virus genomes from next generation sequencing datasets. This application allows the identification of phylogenetic clusters and genotypes from assembled genomes in FASTA format. Since its release in 2019, we have produced a number of typing tools for emergent viruses that have caused large outbreaks, such as Zika and Yellow Fever Virus in Brazil. Here, we present The Genome Detective Coronavirus Typing Tool that can accurately identify the novel severe acute respiratory syndrome (SARS) related coronavirus (SARS-CoV-2) sequences isolated in China and around the world. The tool can accept up to 2,000 sequences per submission and the analysis of a new whole genome sequence will take approximately one minute. The tool has been tested and validated with hundreds of whole genomes from ten coronavirus species, and correctly classified all of the SARS-related coronavirus (SARSr-CoV) and all of the available public data for SARS-CoV-2. The tool also allows tracking of new viral mutations as the outbreak expands globally, which may help to accelerate the development of novel diagnostics, drugs and vaccines to stop the COVID-19 disease.engOxford University PressCoronavírusTipagemGenomaIdentificaçaoCaracterizaçãoFerramentaCoronavirus Typing ToolIdentification and characterizationGenomesCOVID-19Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; 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dc.title.pt_BR.fl_str_mv Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
title Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
spellingShingle Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
Cleemput, Sara
Coronavírus
Tipagem
Genoma
Identificaçao
Caracterização
Ferramenta
Coronavirus Typing Tool
Identification and characterization
Genomes
COVID-19
title_short Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
title_full Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
title_fullStr Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
title_full_unstemmed Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
title_sort Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
author Cleemput, Sara
author_facet Cleemput, Sara
Dumon, Wim
Fonseca, Vagner
Karim, Wasim Abdool
Giovanetti, Marta
Alcantara, Luiz Carlos
Deforche, Koen
Oliveira, Tulio de
author_role author
author2 Dumon, Wim
Fonseca, Vagner
Karim, Wasim Abdool
Giovanetti, Marta
Alcantara, Luiz Carlos
Deforche, Koen
Oliveira, Tulio de
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Cleemput, Sara
Dumon, Wim
Fonseca, Vagner
Karim, Wasim Abdool
Giovanetti, Marta
Alcantara, Luiz Carlos
Deforche, Koen
Oliveira, Tulio de
dc.subject.other.pt_BR.fl_str_mv Coronavírus
Tipagem
Genoma
Identificaçao
Caracterização
Ferramenta
topic Coronavírus
Tipagem
Genoma
Identificaçao
Caracterização
Ferramenta
Coronavirus Typing Tool
Identification and characterization
Genomes
COVID-19
dc.subject.en.pt_BR.fl_str_mv Coronavirus Typing Tool
Identification and characterization
Genomes
COVID-19
description Devido a pandemia mundial do COVID-19, o artigo da revista foi liberado em acesso aberto durante o ano de 2020, visando divulgação e disseminação.
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-03-17T13:30:12Z
dc.date.available.fl_str_mv 2020-03-17T13:30:12Z
dc.date.issued.fl_str_mv 2020
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv CLEEMPUT, Sara et al. Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. Bioinformatics, btaa145, p. 1-4, Feb. 2020.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/40347
dc.identifier.issn.pt_BR.fl_str_mv 1460-2059
dc.identifier.doi.none.fl_str_mv 10.1093/bioinformatics/btaa145
identifier_str_mv CLEEMPUT, Sara et al. Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. Bioinformatics, btaa145, p. 1-4, Feb. 2020.
1460-2059
10.1093/bioinformatics/btaa145
url https://www.arca.fiocruz.br/handle/icict/40347
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
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