Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz

Detalhes bibliográficos
Autor(a) principal: Marini, Naciele
Data de Publicação: 2013
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFPel - Guaiaca
Texto Completo: http://guaiaca.ufpel.edu.br/handle/123456789/2065
Resumo: There is a constant need for studies aiming to increase yield and quality traits in rice, which have to consider abiotic stress tolerance and genetic variability. This work had as objective to characterize rice mutant families regarding rice iron stress tolerance and validate a technique based on retrotransposons with the goal of detecting genetic variability in rice. Also, to analyse gene expression of genes involved in starch synthesis in the rice grain. Therefore, nine mutant families were characterized for phenotypic traits and iron content in hydroponic conditions. Twenty genotypes were molecularly characterized with the REMAP technique and three cultivars were analysed the profiled for starch biosynthesis related gene expression by qRT-PCR. The results obtained demonstrate that the genotypes BR-IRGA 409 and BRS7-Taim characterized as sensitive presented a higher accumulation of Fe2+ in the shoots. The mutant families CGF-Z-M9-444CD, CGF-Z-M9-328 and CGF-Z-M9-243, were ranked in this study as tolerant. The genotype CGF-Z-M9-444CD was one of the mutants that accumulated less iron in the tissues under stress conditions, being also characterized as resistant in the phenotypic analysis. The variables root length, number of roots, iron, zinc and manganese, were altered in response to hydroponic culture growth with excess iron. In the gene expression study, it was possible to detect contrasting genotypes regarding amylose content presented differential expression for some of the analysed genes. Some of these genes have their expression levels altered at the beginning of starch biosynthesis, suggesting a higher contribution at the beginning of grain filling and other genes at the end of grain maturation. There is a tendency, mainly, for the cultivar BRS Firmeza, to increase the activity of studied genes 20 days after flowering with a decrease at 25 days after flowering and a new increase at 30 days after flowering, indicating an association between the activity of these genes and the stay-green character and the late starch accumulation in this genotype. Also, according with the studies performed, it was possible to measure the genetic variability in the rice germplasm used using the REMAP with a combination of low cost and simple protocols. Therefore, it is possible to discriminate genotypes at DNA level with the goal of predicting genetic distance and directed crosses between elite genotypes, thus exploiting population variability and transgressive segregants within breeding programs
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spelling http://lattes.cnpq.br/8058047927313038http://lattes.cnpq.br/4440061243085201Oliveira, Antonio Costa dehttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4780819H4Maia, Luciano Carlos daMarini, Naciele2014-08-20T14:06:12Z2014-01-232014-08-20T14:06:12Z2013-12-07MARINI, Naciele. Phenotypic and molecular studies on the genetic variability, grain quality and iron stress tolerance in rice. 2013. 126 f. Tese (Doutorado em Agronomia) - Universidade Federal de Pelotas, Pelotas, 2013.http://guaiaca.ufpel.edu.br/handle/123456789/2065There is a constant need for studies aiming to increase yield and quality traits in rice, which have to consider abiotic stress tolerance and genetic variability. This work had as objective to characterize rice mutant families regarding rice iron stress tolerance and validate a technique based on retrotransposons with the goal of detecting genetic variability in rice. Also, to analyse gene expression of genes involved in starch synthesis in the rice grain. Therefore, nine mutant families were characterized for phenotypic traits and iron content in hydroponic conditions. Twenty genotypes were molecularly characterized with the REMAP technique and three cultivars were analysed the profiled for starch biosynthesis related gene expression by qRT-PCR. The results obtained demonstrate that the genotypes BR-IRGA 409 and BRS7-Taim characterized as sensitive presented a higher accumulation of Fe2+ in the shoots. The mutant families CGF-Z-M9-444CD, CGF-Z-M9-328 and CGF-Z-M9-243, were ranked in this study as tolerant. The genotype CGF-Z-M9-444CD was one of the mutants that accumulated less iron in the tissues under stress conditions, being also characterized as resistant in the phenotypic analysis. The variables root length, number of roots, iron, zinc and manganese, were altered in response to hydroponic culture growth with excess iron. In the gene expression study, it was possible to detect contrasting genotypes regarding amylose content presented differential expression for some of the analysed genes. Some of these genes have their expression levels altered at the beginning of starch biosynthesis, suggesting a higher contribution at the beginning of grain filling and other genes at the end of grain maturation. There is a tendency, mainly, for the cultivar BRS Firmeza, to increase the activity of studied genes 20 days after flowering with a decrease at 25 days after flowering and a new increase at 30 days after flowering, indicating an association between the activity of these genes and the stay-green character and the late starch accumulation in this genotype. Also, according with the studies performed, it was possible to measure the genetic variability in the rice germplasm used using the REMAP with a combination of low cost and simple protocols. Therefore, it is possible to discriminate genotypes at DNA level with the goal of predicting genetic distance and directed crosses between elite genotypes, thus exploiting population variability and transgressive segregants within breeding programsExiste a constante necessidade de estudos visando o aumento da produtividade e da qualidade de grãos de arroz, auxiliados por avaliações de tolerância a estresses abióticos e, detecção da variabilidade genética. Portanto, este trabalho teve por objetivo caracterizar famílias mutantes de arroz quanto à tolerância ao estresse por toxidez de ferro, validar uma técnica de marcadores moleculares baseados em retrotransposons, com o intuito de detectar variabilidade genética em genótipos de arroz e analisar a expressão dos genes envolvidos na síntese do amido no endosperma de grãos de arroz. Sendo assim, nove famílias mutantes foram caracterizadas para caracteres fenotípicos e conteúdo de ferro em condições de hidroponia. 20 genótipos foram caracterizados com a técnica de REMAP e três cultivares de arroz tiveram a sua expressão gênica caracterizada por qRT-PCR. Os resultados obtidos demonstram que os genótipos BR-IRGA 409 e BRS 7 Taim, apresentam maior acúmulo de Fe2+ na parte aérea. As famílias de mutantes CGF-Z-M9-444CD, CGF-Z-M9-328 e CGF-Z-M9-243 foram classificadas neste estudo como tolerantes. O genótipo CGF-Z-M9-444CD foi um dos mutantes que menos acumulou ferro nos tecidos sob condição de estresse, sendo também caracterizado como tolerantes na analise visual. As variáveis comprimento de raiz, número de raiz, ferro, zinco e manganês, sofreram alterações em resposta ao estresse por ferro em condições hidropônicas. No estudo de expressão gênica para qualidade de grão foi possível constatar que constituições genéticas contrastantes quanto ao teor de amilose apresentam expressão diferencial para alguns genes analisados. Alguns destes genes tem seus níveis de expressão alterados no início do desenvolvimento do endosperma, indicando uma maior contribuição no inicio do enchimento dos grãos e que outros genes tem maior atividade no final do ciclo de desenvolvimento. Existe uma tendência, principalmente, para a cultivar BRS Firmeza de aumento na atividade dos genes estudados aos 20 dias após o florescimento com um declínio aos 25 dias após o florescimento e um aumento novamente aos 30 dias após o florescimento, evidenciando a relação existente entre a atividade destes genes com o caráter stay-green e a acumulação tardia de amido no endosperma deste genótipo. Também de acordo com os estudos realizados foi possível mensurar a variabilidade genética no germoplasma de arroz utilizando a técnica REMAP com baixo custo de execução e sem a demanda de equipamentos caros. Assim, é possível identificar indivíduos mais diferentes a nível de DNA, com o objetivo de utilizar essa informação para a realização de cruzamentos entre genitores distantes geneticamente, explorando assim a variabilidade em populações de segregantes transgressivos dentro de programas de melhoramento.application/pdfporUniversidade Federal de PelotasPrograma de Pós-Graduação em AgronomiaUFPelBRFaculdade de Agronomia Eliseu MacielOryza sativaAmiloseExpressão gênicaDistância genéticaEstresse abióticoAmyloseGene expressionGenetic distanceAbiotic stressCNPQ::CIENCIAS AGRARIAS::AGRONOMIAEstudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arrozPhenotypic and molecular studies on the genetic variability, grain quality and iron stress tolerance in riceinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFPel - Guaiacainstname:Universidade Federal de Pelotas (UFPEL)instacron:UFPELORIGINALtese_naciele_marini.pdfapplication/pdf2585701http://guaiaca.ufpel.edu.br/xmlui/bitstream/123456789/2065/1/tese_naciele_marini.pdf33b5a6dcb2a064ddfbf3b977f715ecffMD51open accessTEXTtese_naciele_marini.pdf.txttese_naciele_marini.pdf.txtExtracted Texttext/plain232293http://guaiaca.ufpel.edu.br/xmlui/bitstream/123456789/2065/2/tese_naciele_marini.pdf.txt54fa45d292c720e3a16a551310812d71MD52open accessTHUMBNAILtese_naciele_marini.pdf.jpgtese_naciele_marini.pdf.jpgGenerated Thumbnailimage/jpeg1293http://guaiaca.ufpel.edu.br/xmlui/bitstream/123456789/2065/3/tese_naciele_marini.pdf.jpg5951060790bafed5fb29ff78f7c80d0aMD53open access123456789/20652023-05-31 12:14:33.322open accessoai:guaiaca.ufpel.edu.br:123456789/2065Repositório InstitucionalPUBhttp://repositorio.ufpel.edu.br/oai/requestrippel@ufpel.edu.br || repositorio@ufpel.edu.br || aline.batista@ufpel.edu.bropendoar:2023-05-31T15:14:33Repositório Institucional da UFPel - Guaiaca - Universidade Federal de Pelotas (UFPEL)false
dc.title.por.fl_str_mv Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
dc.title.alternative.eng.fl_str_mv Phenotypic and molecular studies on the genetic variability, grain quality and iron stress tolerance in rice
title Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
spellingShingle Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
Marini, Naciele
Oryza sativa
Amilose
Expressão gênica
Distância genética
Estresse abiótico
Amylose
Gene expression
Genetic distance
Abiotic stress
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
title_short Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
title_full Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
title_fullStr Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
title_full_unstemmed Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
title_sort Estudos fenotípicos e moleculares sobre variabilidade genética, qualidade de grãos e tolerância ao estresse por ferro em arroz
author Marini, Naciele
author_facet Marini, Naciele
author_role author
dc.contributor.authorLattes.por.fl_str_mv http://lattes.cnpq.br/8058047927313038
dc.contributor.advisorLattes.por.fl_str_mv http://lattes.cnpq.br/4440061243085201
dc.contributor.advisor-co1.fl_str_mv Oliveira, Antonio Costa de
dc.contributor.advisor-co1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4780819H4
dc.contributor.advisor1.fl_str_mv Maia, Luciano Carlos da
dc.contributor.author.fl_str_mv Marini, Naciele
contributor_str_mv Oliveira, Antonio Costa de
Maia, Luciano Carlos da
dc.subject.por.fl_str_mv Oryza sativa
Amilose
Expressão gênica
Distância genética
Estresse abiótico
topic Oryza sativa
Amilose
Expressão gênica
Distância genética
Estresse abiótico
Amylose
Gene expression
Genetic distance
Abiotic stress
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
dc.subject.eng.fl_str_mv Amylose
Gene expression
Genetic distance
Abiotic stress
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
description There is a constant need for studies aiming to increase yield and quality traits in rice, which have to consider abiotic stress tolerance and genetic variability. This work had as objective to characterize rice mutant families regarding rice iron stress tolerance and validate a technique based on retrotransposons with the goal of detecting genetic variability in rice. Also, to analyse gene expression of genes involved in starch synthesis in the rice grain. Therefore, nine mutant families were characterized for phenotypic traits and iron content in hydroponic conditions. Twenty genotypes were molecularly characterized with the REMAP technique and three cultivars were analysed the profiled for starch biosynthesis related gene expression by qRT-PCR. The results obtained demonstrate that the genotypes BR-IRGA 409 and BRS7-Taim characterized as sensitive presented a higher accumulation of Fe2+ in the shoots. The mutant families CGF-Z-M9-444CD, CGF-Z-M9-328 and CGF-Z-M9-243, were ranked in this study as tolerant. The genotype CGF-Z-M9-444CD was one of the mutants that accumulated less iron in the tissues under stress conditions, being also characterized as resistant in the phenotypic analysis. The variables root length, number of roots, iron, zinc and manganese, were altered in response to hydroponic culture growth with excess iron. In the gene expression study, it was possible to detect contrasting genotypes regarding amylose content presented differential expression for some of the analysed genes. Some of these genes have their expression levels altered at the beginning of starch biosynthesis, suggesting a higher contribution at the beginning of grain filling and other genes at the end of grain maturation. There is a tendency, mainly, for the cultivar BRS Firmeza, to increase the activity of studied genes 20 days after flowering with a decrease at 25 days after flowering and a new increase at 30 days after flowering, indicating an association between the activity of these genes and the stay-green character and the late starch accumulation in this genotype. Also, according with the studies performed, it was possible to measure the genetic variability in the rice germplasm used using the REMAP with a combination of low cost and simple protocols. Therefore, it is possible to discriminate genotypes at DNA level with the goal of predicting genetic distance and directed crosses between elite genotypes, thus exploiting population variability and transgressive segregants within breeding programs
publishDate 2013
dc.date.issued.fl_str_mv 2013-12-07
dc.date.accessioned.fl_str_mv 2014-08-20T14:06:12Z
dc.date.available.fl_str_mv 2014-01-23
2014-08-20T14:06:12Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
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dc.identifier.citation.fl_str_mv MARINI, Naciele. Phenotypic and molecular studies on the genetic variability, grain quality and iron stress tolerance in rice. 2013. 126 f. Tese (Doutorado em Agronomia) - Universidade Federal de Pelotas, Pelotas, 2013.
dc.identifier.uri.fl_str_mv http://guaiaca.ufpel.edu.br/handle/123456789/2065
identifier_str_mv MARINI, Naciele. Phenotypic and molecular studies on the genetic variability, grain quality and iron stress tolerance in rice. 2013. 126 f. Tese (Doutorado em Agronomia) - Universidade Federal de Pelotas, Pelotas, 2013.
url http://guaiaca.ufpel.edu.br/handle/123456789/2065
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dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Agronomia
dc.publisher.initials.fl_str_mv UFPel
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Faculdade de Agronomia Eliseu Maciel
publisher.none.fl_str_mv Universidade Federal de Pelotas
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