A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases

Detalhes bibliográficos
Autor(a) principal: Paula, Adelzon Assis de
Data de Publicação: 2018
Outros Autores: Pires, Denise Franqueira, Filho, Pedro Alves, Lemos, Kátia Regina Valente de, Barçante, Eduardo, Pacheco, Antonio Guilherme
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/35579
Resumo: Nominally identified databases were kindly provided by the Department of STDs, AIDS and Viral Hepatitis from the Brazilian Health Ministry.
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spelling Paula, Adelzon Assis dePires, Denise FranqueiraFilho, Pedro AlvesLemos, Kátia Regina Valente deBarçante, EduardoPacheco, Antonio Guilherme2019-09-13T16:31:32Z2019-09-13T16:31:32Z2018PAULA, Adelzon Assis de et al. A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases. International Journal of Medical Informatics, v. 114, p.45-51, 2018.1386-5056https://www.arca.fiocruz.br/handle/icict/3557910.1016/j.ijmedinf.2018.03.005Nominally identified databases were kindly provided by the Department of STDs, AIDS and Viral Hepatitis from the Brazilian Health Ministry.This work was supported by the Carlos Chagas Filho Research Support Foundation/FAPERJ (grant number E-26/201.471/2014), the Strategic Health Research Support Program/PAPES (grant number 407446/2012-5) and the National Council for Scientific and Technological Development/CNPq (grant numbers 407446/2012-5 and 304614/2012-2). The study protocol has been approved by the local institutional review board (approval number 1172797).2019-12-31Fundação Oswaldo Cruz. Presidência. Programa de Computação Científica. Rio de Janeiro, RJ, Brasil.Governo do Estado do Rio de Janeiro. Secretaria de Saúde do Estado do Rio de Janeiro. Rio de Janeiro, RJ, Brasil.Governo do Estado do Rio de Janeiro. Secretaria de Saúde do Estado do Rio de Janeiro. Rio de Janeiro, RJ, Brasil.Governo do Estado do Rio de Janeiro. Secretaria de Saúde do Estado do Rio de Janeiro. Rio de Janeiro, RJ, Brasil.Universidade do Estado do Rio de Janeiro. DataUERJ. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Presidência. Programa de Computação Científica. Rio de Janeiro, RJ, Brasil.Background and objective: While cross-referencing information from people living with HIV/AIDS (PLWHA) to the official mortality database is a critical step in monitoring the HIV/AIDS epidemic in Brazil, the accuracy of the linkage routine may compromise the validity of the final database, yielding to biased epidemiological estimates. We compared the accuracy and the total runtime of two linkage algorithms applied to retrieve vital status information from PLWHA in Brazilian public databases. Methods: Nominally identified records from PLWHA were obtained from three distinct government databases. Linkage routines included an algorithm in Python language (PLA) and Reclink software (RlS), a probabilistic software largely utilized in Brazil. Records from PLWHA1 known to be alive were added to those from patients reported as deceased. Data were then searched into the mortality system. Scenarios where 5% and 50% of patients actually dead were simulated, considering both complete cases and 20% missing maternal names. Results: When complete information was available both algorithms had comparable accuracies. In the scenario of 20% missing maternal names, PLA2 and RlS3 had sensitivities of 94.5% and 94.6% (p > 0.5), respectively; after manual reviewing, PLA sensitivity increased to 98.4% (96.6–100.0) exceeding that for RlS (p < 0.01). PLA had higher positive predictive value in 5% death proportion. Manual reviewing was intrinsically required by RlS in up to 14% register for people actually dead, whereas the corresponding proportion ranged from 1.5% to 2% for PLA. The lack of manual inspection did not alter PLA sensitivity when complete information was available. When incomplete data was available PLA sensitivity increased from 94.5% to 98.4%, thus exceeding that presented by RlS (94.6%, p < 0.05). RlS spanned considerably less processing time compared to PLA. Conclusion: Both linkage algorithms presented interchangeable accuracies in retrieving vital status data from PLWHA. RlS had a considerably lesser runtime but intrinsically required manually reviewing a fastidious proportion of the matched registries. On the other hand, PLA spent quite more runtime but spared manual reviewing at no expense of accuracy.ElsevierA comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databasesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleRecord linkageDeterministic linkageProbabilistic linkageHIVPublic datasetsMortalityHIVinfo:eu-repo/semantics/openAccessengreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/35579/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALA comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV-AIDS patients registered in Brazilian public databases.pdfA comparison of accuracy and 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dc.title.pt_BR.fl_str_mv A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
title A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
spellingShingle A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
Paula, Adelzon Assis de
Record linkage
Deterministic linkage
Probabilistic linkage
HIV
Public datasets
Mortality
HIV
title_short A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
title_full A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
title_fullStr A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
title_full_unstemmed A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
title_sort A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases
author Paula, Adelzon Assis de
author_facet Paula, Adelzon Assis de
Pires, Denise Franqueira
Filho, Pedro Alves
Lemos, Kátia Regina Valente de
Barçante, Eduardo
Pacheco, Antonio Guilherme
author_role author
author2 Pires, Denise Franqueira
Filho, Pedro Alves
Lemos, Kátia Regina Valente de
Barçante, Eduardo
Pacheco, Antonio Guilherme
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Paula, Adelzon Assis de
Pires, Denise Franqueira
Filho, Pedro Alves
Lemos, Kátia Regina Valente de
Barçante, Eduardo
Pacheco, Antonio Guilherme
dc.subject.en.en.fl_str_mv Record linkage
Deterministic linkage
Probabilistic linkage
HIV
Public datasets
Mortality
topic Record linkage
Deterministic linkage
Probabilistic linkage
HIV
Public datasets
Mortality
HIV
dc.subject.decs.pt_BR.fl_str_mv HIV
description Nominally identified databases were kindly provided by the Department of STDs, AIDS and Viral Hepatitis from the Brazilian Health Ministry.
publishDate 2018
dc.date.issued.fl_str_mv 2018
dc.date.accessioned.fl_str_mv 2019-09-13T16:31:32Z
dc.date.available.fl_str_mv 2019-09-13T16:31:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.citation.fl_str_mv PAULA, Adelzon Assis de et al. A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases. International Journal of Medical Informatics, v. 114, p.45-51, 2018.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/35579
dc.identifier.issn.pt_BR.fl_str_mv 1386-5056
dc.identifier.doi.pt_BR.fl_str_mv 10.1016/j.ijmedinf.2018.03.005
identifier_str_mv PAULA, Adelzon Assis de et al. A comparison of accuracy and computational feasibility of two record linkage algorithms in retrieving vital status information from HIV/AIDS patients registered in Brazilian public databases. International Journal of Medical Informatics, v. 114, p.45-51, 2018.
1386-5056
10.1016/j.ijmedinf.2018.03.005
url https://www.arca.fiocruz.br/handle/icict/35579
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
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