Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State

Detalhes bibliográficos
Autor(a) principal: Ribeiro, Ieda Pereira
Data de Publicação: 2023
Outros Autores: Delatorre, Edson, Abreu, Filipe Vieira Santos de, Santos, Alexandre Araújo Cunha dos, Furtado, Nathália Dias, Ferreira-de-Brito, Anielly, Pina-Costa, Anielle de, Neves, Maycon Sebastião Alberto Santos, Castro, Márcia Gonçalves de, Motta, Monique de Albuquerque, Brasil, Patricia, Lourenço-de-Oliveira, Ricardo, Bonaldo, Myrna Cristina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/58977
Resumo: Institutional Review Board Statement: The study was conducted in accordance with the Declaration of Helsinki, and approved by the Institutional Ethics Committee of Instituto Oswaldo Cruz (IOC) (CAAE 69206217.8.0000.5248), which exempted the need for specific written informed consent from patients or their legal representatives. The animal study protocol was approved by the Institutional Ethics Committee of Brazilian Ministry of Environment (SISBIO 41837-3—20 May 2015, 52472-2—26 January 2016, and 54707-5—25 August 2016) and Rio de Janeiro’s Environment Agency (INEA 012/2016—07 February 2016 and 019/2018—19 April 2018) and by the institutional Ethics Committee for Animal Experimentation (protocol CEUA/IOC-004/2015—10 April 2015, licenseL037/2016—24 August 2016). Informed Consent Statement: Patient consent was waived due to the exemption of the Ethics Committee of Instituto Oswaldo Cruz. Data Availability Statement: Not applicable. Acknowledgments: To Gonzalo Bello for the inspiring insights, valuable discussions of methodological approaches and results throughout the outbreak, and study design. To Romário Gabriel Aquino (Environmental Surveillance, Secretaria Municipal de Saúde de Angra dos Reis), Tercius Barrada (Parque Estadual da Ilha Grande), Mário Sérgio Ribeiro and Patrícia Menegueti (Secretaria de Saúde do Estado do Rio de Janeiro), Prefeitura de Macaé, Centro de Estudos Ambientais e Desenvolvimento Sustentável (CEADS/UERJ), Marcelo Celestino dos Santos, Mauro M. Muniz, and Marcelo Q. Gomes for the help in obtaining the viral samples and support in the fieldwork. We are grateful to the Plataforma Genômica—Sequenciamento de DNA-RPT01A—Rede de Plataformas Tecnológicas FIOCRUZ for the services provided in the genome sequencing. We also thank Heloísa Diniz from Serviço de Produção e Tratamento de Imagens, IOC, Fiocruz, for the design of the figures.
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spelling Ribeiro, Ieda PereiraDelatorre, EdsonAbreu, Filipe Vieira Santos deSantos, Alexandre Araújo Cunha dosFurtado, Nathália DiasFerreira-de-Brito, AniellyPina-Costa, Anielle deNeves, Maycon Sebastião Alberto SantosCastro, Márcia Gonçalves deMotta, Monique de AlbuquerqueBrasil, PatriciaLourenço-de-Oliveira, RicardoBonaldo, Myrna Cristina2023-06-08T00:27:41Z2023-06-08T00:27:41Z2023RIBEIRO, Ieda Pereira et al. Ecological, Genetic, and Phylogenetic Aspects of YFV 2017-2019 Spread in Rio de Janeiro State. Viruses, v. 15, n. 2, p. 1-17, Feb. 2023.1999-4915https://www.arca.fiocruz.br/handle/icict/5897710.3390/v150204371999-4915Institutional Review Board Statement: The study was conducted in accordance with the Declaration of Helsinki, and approved by the Institutional Ethics Committee of Instituto Oswaldo Cruz (IOC) (CAAE 69206217.8.0000.5248), which exempted the need for specific written informed consent from patients or their legal representatives. The animal study protocol was approved by the Institutional Ethics Committee of Brazilian Ministry of Environment (SISBIO 41837-3—20 May 2015, 52472-2—26 January 2016, and 54707-5—25 August 2016) and Rio de Janeiro’s Environment Agency (INEA 012/2016—07 February 2016 and 019/2018—19 April 2018) and by the institutional Ethics Committee for Animal Experimentation (protocol CEUA/IOC-004/2015—10 April 2015, licenseL037/2016—24 August 2016). Informed Consent Statement: Patient consent was waived due to the exemption of the Ethics Committee of Instituto Oswaldo Cruz. Data Availability Statement: Not applicable. Acknowledgments: To Gonzalo Bello for the inspiring insights, valuable discussions of methodological approaches and results throughout the outbreak, and study design. To Romário Gabriel Aquino (Environmental Surveillance, Secretaria Municipal de Saúde de Angra dos Reis), Tercius Barrada (Parque Estadual da Ilha Grande), Mário Sérgio Ribeiro and Patrícia Menegueti (Secretaria de Saúde do Estado do Rio de Janeiro), Prefeitura de Macaé, Centro de Estudos Ambientais e Desenvolvimento Sustentável (CEADS/UERJ), Marcelo Celestino dos Santos, Mauro M. Muniz, and Marcelo Q. Gomes for the help in obtaining the viral samples and support in the fieldwork. We are grateful to the Plataforma Genômica—Sequenciamento de DNA-RPT01A—Rede de Plataformas Tecnológicas FIOCRUZ for the services provided in the genome sequencing. We also thank Heloísa Diniz from Serviço de Produção e Tratamento de Imagens, IOC, Fiocruz, for the design of the figures.This research was funded by is funded by grants from CONSELHO NACIONAL DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO (309577/2013-6, 312446/2018-7, and 309471/2016-8), FUNDAÇÃO CARLOS CHAGAS FILHO DE AMPARO À PESQUISA DO ESTADO DO RIO DE JANEIRO (E-26/203.064/2016), INSTITUT PASTEUR Transversal Research Program (PTR 528), COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIOR (COFECUB 799-14 and AUXPE 1731/2014), Preventing and Combating the Zika Virus, MCTIC/FNDCT -CNPq/MECCAPES/MS-Decit (440865/2016–6, 426767/2018-7, and 88881.130684/2016-01) and INOVA-Fiocruz (VPPIS-004-FIO18). MCB is a recipient of the fellowships for Productivity in Technological Development and Innovative Extension (308164/2020–2; CNPq) and Cientistas do Nosso Estado (E-26/201.207/2021; FAPERJ).Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Molecular de Flavivírus. Rio de Janeiro, RJ, Brazil.Universidade Federal do Espírito Santo. Centro de Ciências Exatas, Naturais e da Saúde. Laboratório de Genômica Evolutiva e Ambiental, Departamento de Biologia. Vitória, ES, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil / Instituto Federal do Norte de Minas Gerais. Salinas, MG, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Molecular de Flavivírus. Rio de Janeiro, RJ, Brazil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Molecular de Flavivírus. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas. Laboratório de Doenças Febris Agudas. Rio de Janeiro, RJ, Brazil / Faculdade de Medicina de Teresópolis. Centro Universitário Serra dos Órgãos UNIFESO. Teresópolis, RJ, Brazil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas. Laboratório de Doenças Febris Agudas. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Mosquitos Transmissores de Hematozoários. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Molecular de Flavivírus. Rio de Janeiro, RJ, Brasil.In Brazil, a yellow fever (YF) outbreak was reported in areas considered YF-free for decades. The low vaccination coverage and the increasing forest fragmentation, with the wide distribution of vector mosquitoes, have been related to yellow fever virus (YFV) transmission beyond endemic areas since 2016. Aiming to elucidate the molecular and phylogenetic aspects of YFV spread on a local scale, we generated 43 new YFV genomes sampled from humans, non-human primates (NHP), and primarily, mosquitoes from highly heterogenic areas in 15 localities from Rio de Janeiro (RJ) state during the YFV 2016-2019 outbreak in southeast Brazil. Our analysis revealed that the genetic diversity and spatial distribution of the sylvatic transmission of YFV in RJ originated from at least two introductions and followed two chains of dissemination, here named the YFV RJ-I and YFV RJ-II clades. They moved with similar dispersal speeds from the north to the south of the RJ state in parallel directions, separated by the Serra do Mar Mountain chain, with YFV RJ-I invading the north coast of São Paulo state. The YFV RJ-I clade showed a more significant heterogeneity across the entire polyprotein. The YFV RJ-II clade, with only two amino acid polymorphisms, mapped at NS1 (I1086V), present only in mosquitoes at the same locality and NS4A (I2176V), shared by all YFV clade RJ-II, suggests a recent clustering of YFV isolates collected from different hosts. Our analyses strengthen the role of surveillance, genomic analyses of YVF isolated from other hosts, and environmental studies into the strategies to forecast, control, and prevent yellow fever outbreaks.engMDPIEcological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro Stateinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazilian outbreakAmino acid polymorphismsEcologyEpidemiologyGenomic surveillanceYellow fever virusinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; 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dc.title.en_US.fl_str_mv Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
title Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
spellingShingle Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
Ribeiro, Ieda Pereira
Brazilian outbreak
Amino acid polymorphisms
Ecology
Epidemiology
Genomic surveillance
Yellow fever virus
title_short Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
title_full Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
title_fullStr Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
title_full_unstemmed Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
title_sort Ecological, Genetic, and Phylogenetic Aspects of YFV 2017–2019 Spread in Rio de Janeiro State
author Ribeiro, Ieda Pereira
author_facet Ribeiro, Ieda Pereira
Delatorre, Edson
Abreu, Filipe Vieira Santos de
Santos, Alexandre Araújo Cunha dos
Furtado, Nathália Dias
Ferreira-de-Brito, Anielly
Pina-Costa, Anielle de
Neves, Maycon Sebastião Alberto Santos
Castro, Márcia Gonçalves de
Motta, Monique de Albuquerque
Brasil, Patricia
Lourenço-de-Oliveira, Ricardo
Bonaldo, Myrna Cristina
author_role author
author2 Delatorre, Edson
Abreu, Filipe Vieira Santos de
Santos, Alexandre Araújo Cunha dos
Furtado, Nathália Dias
Ferreira-de-Brito, Anielly
Pina-Costa, Anielle de
Neves, Maycon Sebastião Alberto Santos
Castro, Márcia Gonçalves de
Motta, Monique de Albuquerque
Brasil, Patricia
Lourenço-de-Oliveira, Ricardo
Bonaldo, Myrna Cristina
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ribeiro, Ieda Pereira
Delatorre, Edson
Abreu, Filipe Vieira Santos de
Santos, Alexandre Araújo Cunha dos
Furtado, Nathália Dias
Ferreira-de-Brito, Anielly
Pina-Costa, Anielle de
Neves, Maycon Sebastião Alberto Santos
Castro, Márcia Gonçalves de
Motta, Monique de Albuquerque
Brasil, Patricia
Lourenço-de-Oliveira, Ricardo
Bonaldo, Myrna Cristina
dc.subject.en.en_US.fl_str_mv Brazilian outbreak
Amino acid polymorphisms
Ecology
Epidemiology
Genomic surveillance
Yellow fever virus
topic Brazilian outbreak
Amino acid polymorphisms
Ecology
Epidemiology
Genomic surveillance
Yellow fever virus
description Institutional Review Board Statement: The study was conducted in accordance with the Declaration of Helsinki, and approved by the Institutional Ethics Committee of Instituto Oswaldo Cruz (IOC) (CAAE 69206217.8.0000.5248), which exempted the need for specific written informed consent from patients or their legal representatives. The animal study protocol was approved by the Institutional Ethics Committee of Brazilian Ministry of Environment (SISBIO 41837-3—20 May 2015, 52472-2—26 January 2016, and 54707-5—25 August 2016) and Rio de Janeiro’s Environment Agency (INEA 012/2016—07 February 2016 and 019/2018—19 April 2018) and by the institutional Ethics Committee for Animal Experimentation (protocol CEUA/IOC-004/2015—10 April 2015, licenseL037/2016—24 August 2016). Informed Consent Statement: Patient consent was waived due to the exemption of the Ethics Committee of Instituto Oswaldo Cruz. Data Availability Statement: Not applicable. Acknowledgments: To Gonzalo Bello for the inspiring insights, valuable discussions of methodological approaches and results throughout the outbreak, and study design. To Romário Gabriel Aquino (Environmental Surveillance, Secretaria Municipal de Saúde de Angra dos Reis), Tercius Barrada (Parque Estadual da Ilha Grande), Mário Sérgio Ribeiro and Patrícia Menegueti (Secretaria de Saúde do Estado do Rio de Janeiro), Prefeitura de Macaé, Centro de Estudos Ambientais e Desenvolvimento Sustentável (CEADS/UERJ), Marcelo Celestino dos Santos, Mauro M. Muniz, and Marcelo Q. Gomes for the help in obtaining the viral samples and support in the fieldwork. We are grateful to the Plataforma Genômica—Sequenciamento de DNA-RPT01A—Rede de Plataformas Tecnológicas FIOCRUZ for the services provided in the genome sequencing. We also thank Heloísa Diniz from Serviço de Produção e Tratamento de Imagens, IOC, Fiocruz, for the design of the figures.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-06-08T00:27:41Z
dc.date.available.fl_str_mv 2023-06-08T00:27:41Z
dc.date.issued.fl_str_mv 2023
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv RIBEIRO, Ieda Pereira et al. Ecological, Genetic, and Phylogenetic Aspects of YFV 2017-2019 Spread in Rio de Janeiro State. Viruses, v. 15, n. 2, p. 1-17, Feb. 2023.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/58977
dc.identifier.issn.en_US.fl_str_mv 1999-4915
dc.identifier.doi.none.fl_str_mv 10.3390/v15020437
dc.identifier.eissn.none.fl_str_mv 1999-4915
identifier_str_mv RIBEIRO, Ieda Pereira et al. Ecological, Genetic, and Phylogenetic Aspects of YFV 2017-2019 Spread in Rio de Janeiro State. Viruses, v. 15, n. 2, p. 1-17, Feb. 2023.
1999-4915
10.3390/v15020437
url https://www.arca.fiocruz.br/handle/icict/58977
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
bitstream.url.fl_str_mv https://www.arca.fiocruz.br/bitstream/icict/58977/1/license.txt
https://www.arca.fiocruz.br/bitstream/icict/58977/2/ve_Ieda_Ribeiro_etal_IOC_INI_2023.pdf
bitstream.checksum.fl_str_mv 5a560609d32a3863062d77ff32785d58
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bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)
repository.mail.fl_str_mv repositorio.arca@fiocruz.br
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