RATT: Rapid Annotation Transfer Tool

Detalhes bibliográficos
Autor(a) principal: Otto, Thomas D.
Data de Publicação: 2011
Outros Autores: Dillon, Gary P., Degrave, Wim S., Berriman, Matthew
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/30135
Resumo: Wellcome Trust Sanger Institute. Wellcome Trust Genome Campus. Parasite genomics. Cambridge, UK.
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spelling Otto, Thomas D.Dillon, Gary P.Degrave, Wim S.Berriman, Matthew2018-11-22T10:24:33Z2018-11-22T10:24:33Z2011OTTO, Thomas D.; DILLON, Gary P.; DEGRAVE, Win S.; BERRIMAN, Matthew. RATT: Rapid Annotation Transfer Tool. Nucleic Acids Research, v.39, n.9, e57, 7p, Feb. 2011.0305-1048https://www.arca.fiocruz.br/handle/icict/3013510.1093/nar/gkq12681362-4962engOxford University PressFerramenta de Transferência Rápida de AnotaçõesGenomaRapid Annotation Transfer ToolGenomeRATT: Rapid Annotation Transfer Toolinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleWellcome Trust Sanger Institute. Wellcome Trust Genome Campus. Parasite genomics. Cambridge, UK.Wellcome Trust Sanger Institute. Wellcome Trust Genome Campus. Parasite genomics. Cambridge, UK.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genômica Funcional e Bioinformatica. Rio de Janeiro, RJ, Brasil.Wellcome Trust Sanger Institute. Wellcome Trust Genome Campus. Parasite genomics. Cambridge, UK.Second-generation sequencing technologies have made large-scale sequencing projects commonplace. However, making use of these datasets often requires gene function to be ascribed genome wide. Although tool development has kept pace with the changes in sequence production, for tasks such as mapping, de novo assembly or visualization, genome annotation remains a challenge. We have developed a method to rapidly provide accurate annotation for new genomes using previously annotated genomes as a reference. The method, implemented in a tool called RATT (Rapid Annotation Transfer Tool), transfers annotations from a high-quality reference to a new genome on the basis of conserved synteny. We demonstrate that a Mycobacterium tuberculosis genome or a single 2.5 Mb chromosome from a malaria parasite can be annotated in less than five minutes with only modest computational resources. RATT is available at http://ratt.sourceforge.net.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/30135/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALwin-degrave_etal_IOC_2011.pdfwin-degrave_etal_IOC_2011.pdfapplication/pdf4374503https://www.arca.fiocruz.br/bitstream/icict/30135/2/win-degrave_etal_IOC_2011.pdf18de281af85fb64e34abaece725c18a6MD52TEXTwin-degrave_etal_IOC_2011.pdf.txtwin-degrave_etal_IOC_2011.pdf.txtExtracted texttext/plain29320https://www.arca.fiocruz.br/bitstream/icict/30135/3/win-degrave_etal_IOC_2011.pdf.txt39609bd042bd67746496d7a095816292MD53icict/301352018-11-23 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dc.title.pt_BR.fl_str_mv RATT: Rapid Annotation Transfer Tool
title RATT: Rapid Annotation Transfer Tool
spellingShingle RATT: Rapid Annotation Transfer Tool
Otto, Thomas D.
Ferramenta de Transferência Rápida de Anotações
Genoma
Rapid Annotation Transfer Tool
Genome
title_short RATT: Rapid Annotation Transfer Tool
title_full RATT: Rapid Annotation Transfer Tool
title_fullStr RATT: Rapid Annotation Transfer Tool
title_full_unstemmed RATT: Rapid Annotation Transfer Tool
title_sort RATT: Rapid Annotation Transfer Tool
author Otto, Thomas D.
author_facet Otto, Thomas D.
Dillon, Gary P.
Degrave, Wim S.
Berriman, Matthew
author_role author
author2 Dillon, Gary P.
Degrave, Wim S.
Berriman, Matthew
author2_role author
author
author
dc.contributor.author.fl_str_mv Otto, Thomas D.
Dillon, Gary P.
Degrave, Wim S.
Berriman, Matthew
dc.subject.other.pt_BR.fl_str_mv Ferramenta de Transferência Rápida de Anotações
Genoma
topic Ferramenta de Transferência Rápida de Anotações
Genoma
Rapid Annotation Transfer Tool
Genome
dc.subject.en.pt_BR.fl_str_mv Rapid Annotation Transfer Tool
Genome
description Wellcome Trust Sanger Institute. Wellcome Trust Genome Campus. Parasite genomics. Cambridge, UK.
publishDate 2011
dc.date.issued.fl_str_mv 2011
dc.date.accessioned.fl_str_mv 2018-11-22T10:24:33Z
dc.date.available.fl_str_mv 2018-11-22T10:24:33Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv OTTO, Thomas D.; DILLON, Gary P.; DEGRAVE, Win S.; BERRIMAN, Matthew. RATT: Rapid Annotation Transfer Tool. Nucleic Acids Research, v.39, n.9, e57, 7p, Feb. 2011.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/30135
dc.identifier.issn.pt_BR.fl_str_mv 0305-1048
dc.identifier.doi.none.fl_str_mv 10.1093/nar/gkq1268
dc.identifier.eissn.none.fl_str_mv 1362-4962
identifier_str_mv OTTO, Thomas D.; DILLON, Gary P.; DEGRAVE, Win S.; BERRIMAN, Matthew. RATT: Rapid Annotation Transfer Tool. Nucleic Acids Research, v.39, n.9, e57, 7p, Feb. 2011.
0305-1048
10.1093/nar/gkq1268
1362-4962
url https://www.arca.fiocruz.br/handle/icict/30135
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
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reponame_str Repositório Institucional da FIOCRUZ (ARCA)
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