A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines.
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 |
Resumo: | The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
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A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines.BioinformáticaExpressão genéticaSojaGeneSoybeansGenesBioinformaticsGene expressionThe Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP.NASCIMENTO, L. C. doCOSTA, G. G. L.BINNECK, E.PEREIRA, G. A. G.CARAZZOLLE, M. F.2012-06-18T11:11:11Z2012-06-18T11:11:11Z2012-06-1820122017-07-13T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012.http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T00:35:01Zoai:www.alice.cnptia.embrapa.br:doc/926586Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T00:35:01falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T00:35:01Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
spellingShingle |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. NASCIMENTO, L. C. do Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression |
title_short |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_full |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_fullStr |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_full_unstemmed |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_sort |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
author |
NASCIMENTO, L. C. do |
author_facet |
NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. |
author_role |
author |
author2 |
COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP. |
dc.contributor.author.fl_str_mv |
NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. |
dc.subject.por.fl_str_mv |
Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression |
topic |
Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression |
description |
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-06-18T11:11:11Z 2012-06-18T11:11:11Z 2012-06-18 2012 2017-07-13T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012. http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 |
identifier_str_mv |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503364508123136 |