Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Detalhes bibliográficos
Autor(a) principal: TIZIOTO, P. L.
Data de Publicação: 2016
Outros Autores: COUTINHO, L. L., OLIVEIRA, P. S. N., CESAR, A. S. M., DINIZ, W. J. S., LIMA, A. O., ROCHA, M. I., DECKER, J. E., SCHNABEL, R. D., MOURÃO, G. B., TULLIO, R. R., ZERLOTINI NETO, A., TAYLOR, J. F., REGITANO, L. C. de A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1073482
Resumo: Residual feed intake (RFI), a measure of feed efficiency (FE), is defined as the difference between the observed and the predictable feed intake considering size and growth of the animal. It is extremely important to beef production systems due to its impact on the allocation of land areas to alternative agricultural production, animal methane emissions, food demand and cost of production. Global differential gene expression analysis between high and low RFI groups (HRFI and LRFI: less and more efficient, respectively) revealed 73 differentially expressed (DE) annotated genes in Longissimus thoracis (LT) muscle of Nelore steers. These genes are involved in the overrepresented pathways Metabolism of Xenobiotics by Cytochrome P450 and Butanoate and Tryptophan Metabolism. Among the DE transcripts were several proteins related to mitochondrial function and the metabolism of lipids. Our findings indicate that observed gene expression differences are primarily related to metabolic processes underlying oxidative stress. Genes involved in the metabolism of xenobiotics and antioxidant mechanisms were primarily down-regulated, while genes responsible for lipid oxidation and ketogenesis were up-regulated in HRFI group. By using LT muscle, this study reinforces our previous findings using liver tissue and reveals new genes and likely tissue-specific regulators playing key-roles in these processes.
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spelling Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.Genome-wide association studiesQuantitative trait locusGado de corteGene expressionFeed conversionBeef cattleNelloreResidual feed intake (RFI), a measure of feed efficiency (FE), is defined as the difference between the observed and the predictable feed intake considering size and growth of the animal. It is extremely important to beef production systems due to its impact on the allocation of land areas to alternative agricultural production, animal methane emissions, food demand and cost of production. Global differential gene expression analysis between high and low RFI groups (HRFI and LRFI: less and more efficient, respectively) revealed 73 differentially expressed (DE) annotated genes in Longissimus thoracis (LT) muscle of Nelore steers. These genes are involved in the overrepresented pathways Metabolism of Xenobiotics by Cytochrome P450 and Butanoate and Tryptophan Metabolism. Among the DE transcripts were several proteins related to mitochondrial function and the metabolism of lipids. Our findings indicate that observed gene expression differences are primarily related to metabolic processes underlying oxidative stress. Genes involved in the metabolism of xenobiotics and antioxidant mechanisms were primarily down-regulated, while genes responsible for lipid oxidation and ketogenesis were up-regulated in HRFI group. By using LT muscle, this study reinforces our previous findings using liver tissue and reveals new genes and likely tissue-specific regulators playing key-roles in these processes.POLYANA C. TIZIOTO, CPPSE, University of Missouri; LUIZ L. COUTINHO, Esalq/USP; PRISCILA S. N. OLIVEIRA, CPPSE; ALINE S. M. CESAR, Esalq/USP; WELLISON J. S. DINIZ, UFSCar; ANDRESSA O. LIMA, UFSCar; MARINA I. ROCHA, UFSCar; JARED E. DECKER, University of Missouri; ROBERT D. SCHNABEL, University of Missouri; GERSON B. MOURÃO, Esalq/USP; RYMER RAMIZ TULLIO, CPPSE; ADHEMAR ZERLOTINI NETO, CNPTIA; JEREMY F. TAYLOR, University of Missouri; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE.TIZIOTO, P. L.COUTINHO, L. L.OLIVEIRA, P. S. N.CESAR, A. S. M.DINIZ, W. J. S.LIMA, A. O.ROCHA, M. I.DECKER, J. E.SCHNABEL, R. D.MOURÃO, G. B.TULLIO, R. R.ZERLOTINI NETO, A.TAYLOR, J. F.REGITANO, L. C. de A.2019-06-15T00:40:16Z2019-06-15T00:40:16Z2017-08-0220162019-06-15T00:40:16Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleScientific Reports, v. 6, p. 1-12, 2016.http://www.alice.cnptia.embrapa.br/alice/handle/doc/107348210.1038/srep39493enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-06-15T00:40:23Zoai:www.alice.cnptia.embrapa.br:doc/1073482Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-06-15T00:40:23falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-06-15T00:40:23Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
title Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
spellingShingle Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
TIZIOTO, P. L.
Genome-wide association studies
Quantitative trait locus
Gado de corte
Gene expression
Feed conversion
Beef cattle
Nellore
title_short Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
title_full Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
title_fullStr Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
title_full_unstemmed Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
title_sort Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
author TIZIOTO, P. L.
author_facet TIZIOTO, P. L.
COUTINHO, L. L.
OLIVEIRA, P. S. N.
CESAR, A. S. M.
DINIZ, W. J. S.
LIMA, A. O.
ROCHA, M. I.
DECKER, J. E.
SCHNABEL, R. D.
MOURÃO, G. B.
TULLIO, R. R.
ZERLOTINI NETO, A.
TAYLOR, J. F.
REGITANO, L. C. de A.
author_role author
author2 COUTINHO, L. L.
OLIVEIRA, P. S. N.
CESAR, A. S. M.
DINIZ, W. J. S.
LIMA, A. O.
ROCHA, M. I.
DECKER, J. E.
SCHNABEL, R. D.
MOURÃO, G. B.
TULLIO, R. R.
ZERLOTINI NETO, A.
TAYLOR, J. F.
REGITANO, L. C. de A.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv POLYANA C. TIZIOTO, CPPSE, University of Missouri; LUIZ L. COUTINHO, Esalq/USP; PRISCILA S. N. OLIVEIRA, CPPSE; ALINE S. M. CESAR, Esalq/USP; WELLISON J. S. DINIZ, UFSCar; ANDRESSA O. LIMA, UFSCar; MARINA I. ROCHA, UFSCar; JARED E. DECKER, University of Missouri; ROBERT D. SCHNABEL, University of Missouri; GERSON B. MOURÃO, Esalq/USP; RYMER RAMIZ TULLIO, CPPSE; ADHEMAR ZERLOTINI NETO, CNPTIA; JEREMY F. TAYLOR, University of Missouri; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE.
dc.contributor.author.fl_str_mv TIZIOTO, P. L.
COUTINHO, L. L.
OLIVEIRA, P. S. N.
CESAR, A. S. M.
DINIZ, W. J. S.
LIMA, A. O.
ROCHA, M. I.
DECKER, J. E.
SCHNABEL, R. D.
MOURÃO, G. B.
TULLIO, R. R.
ZERLOTINI NETO, A.
TAYLOR, J. F.
REGITANO, L. C. de A.
dc.subject.por.fl_str_mv Genome-wide association studies
Quantitative trait locus
Gado de corte
Gene expression
Feed conversion
Beef cattle
Nellore
topic Genome-wide association studies
Quantitative trait locus
Gado de corte
Gene expression
Feed conversion
Beef cattle
Nellore
description Residual feed intake (RFI), a measure of feed efficiency (FE), is defined as the difference between the observed and the predictable feed intake considering size and growth of the animal. It is extremely important to beef production systems due to its impact on the allocation of land areas to alternative agricultural production, animal methane emissions, food demand and cost of production. Global differential gene expression analysis between high and low RFI groups (HRFI and LRFI: less and more efficient, respectively) revealed 73 differentially expressed (DE) annotated genes in Longissimus thoracis (LT) muscle of Nelore steers. These genes are involved in the overrepresented pathways Metabolism of Xenobiotics by Cytochrome P450 and Butanoate and Tryptophan Metabolism. Among the DE transcripts were several proteins related to mitochondrial function and the metabolism of lipids. Our findings indicate that observed gene expression differences are primarily related to metabolic processes underlying oxidative stress. Genes involved in the metabolism of xenobiotics and antioxidant mechanisms were primarily down-regulated, while genes responsible for lipid oxidation and ketogenesis were up-regulated in HRFI group. By using LT muscle, this study reinforces our previous findings using liver tissue and reveals new genes and likely tissue-specific regulators playing key-roles in these processes.
publishDate 2016
dc.date.none.fl_str_mv 2016
2017-08-02
2019-06-15T00:40:16Z
2019-06-15T00:40:16Z
2019-06-15T00:40:16Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Scientific Reports, v. 6, p. 1-12, 2016.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1073482
10.1038/srep39493
identifier_str_mv Scientific Reports, v. 6, p. 1-12, 2016.
10.1038/srep39493
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1073482
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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