Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)

Detalhes bibliográficos
Autor(a) principal: Sousa, Rodrigo Petry Corrêa de
Data de Publicação: 2022
Outros Autores: Vasconcelos, Carolina Pinheiro, Rosário, Nayara Furtado do, Oliveira Filho, Aldemir Branco de, Oliveira, Edivaldo Herculano Corrêa de, Cioffi, Marcelo de Bello, Vallinoto, Marcelo, Oliveira, Gláucia Caroline Silva
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/4539
Resumo: The order Elopiformes includes fish species of medium to large size with a circumglobal distribution, in both the open sea, coastal, and estuarine waters. The Elopiformes are considered an excellent model for evolutionary studies due to their ample adaptive capacity, which allow them to exploit a range of different ecological niches. In this study, we analyzed the karyotype structure and distribution of two classes of repetitive DNA (microsatellites and transposable elements) in two Elopiformes species (Elops smithi and Megalops atlanticus). The results showed that the microsatellite sequences had a very similar distribution in these species, primarily associated to heterochromatin (centromeres and telomeres), suggesting these sequences contribute to the chromosome structure. In contrast, specific signals detected throughout the euchromatic regions indicate that some of these sequences may play a role in the regulation of gene expression. By contrast, the transposable elements presented a distinct distribution in the two species, pointing to a possible interspecific difference in the function of these sequences in the genomes of the two species. Therefore, the comparative genome mapping provides new insights into the structure and organization of these repetitive sequences in the Elopiformes genome.
id IEC-2_a0f1262b4e0616018eb88c7db6bfe5be
oai_identifier_str oai:patua.iec.gov.br:iec/4539
network_acronym_str IEC-2
network_name_str Repositório Digital do Instituto Evandro Chagas (Patuá)
repository_id_str
spelling Sousa, Rodrigo Petry Corrêa deVasconcelos, Carolina PinheiroRosário, Nayara Furtado doOliveira Filho, Aldemir Branco deOliveira, Edivaldo Herculano Corrêa deCioffi, Marcelo de BelloVallinoto, MarceloOliveira, Gláucia Caroline Silva2022-06-02T14:41:20Z2022-06-02T14:41:20Z2022Sousa, Rodrigo Petry Corrêa de et al. Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha). Zebrafish, v. 19, n. 1, p. xx, Feb. 2022.1557-8542https://patua.iec.gov.br/handle/iec/453910.1089/zeb.2021.0027The order Elopiformes includes fish species of medium to large size with a circumglobal distribution, in both the open sea, coastal, and estuarine waters. The Elopiformes are considered an excellent model for evolutionary studies due to their ample adaptive capacity, which allow them to exploit a range of different ecological niches. In this study, we analyzed the karyotype structure and distribution of two classes of repetitive DNA (microsatellites and transposable elements) in two Elopiformes species (Elops smithi and Megalops atlanticus). The results showed that the microsatellite sequences had a very similar distribution in these species, primarily associated to heterochromatin (centromeres and telomeres), suggesting these sequences contribute to the chromosome structure. In contrast, specific signals detected throughout the euchromatic regions indicate that some of these sequences may play a role in the regulation of gene expression. By contrast, the transposable elements presented a distinct distribution in the two species, pointing to a possible interspecific difference in the function of these sequences in the genomes of the two species. Therefore, the comparative genome mapping provides new insights into the structure and organization of these repetitive sequences in the Elopiformes genome.Universidade Federal do Pará. Instituto de Estudos Costeiros. Laboratório de Evolução. Bragança, PA, Brazil / Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, BrazilUniversidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, BrazilUniversidade Federal do Pará. Instituto de Estudos Costeiros. Laboratório de Evolução. Bragança, PA, BrazilUniversidade Federal do Pará. Instituto de Estudos Costeiros. Laboratório de Evolução. Bragança, PA, BrazilUniversidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Culturas de Células e Citogenética. Ananindeua, PA, BrasilUniversidade Federal de São Carlos. Departamento de Evolução e Genética. Laboratório de Citogenética de Peixes. São Carlos, SP, BrazilUniversidade Federal do Pará. Instituto de Estudos Costeiros. Laboratório de Evolução. Bragança, PA, Brazil / Universidade do Porto - Campus Agrário de Vairão. Research Center in Biodiversity and Genetic Resources, Associated Laboratory. Vairão, PT, Portugal.Universidade Federal do Pará. Instituto de Estudos Costeiros. Laboratório de Evolução. Bragança, PA, BrazilengMary Ann LiebertEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePeixes / genéticaDNA RecombinanteEstruturas CromossômicasHeterocromatina / genéticaAmbiente MarinhoFauna MarinhaTelômero / genéticaElementos de DNA Transponíveisinfo:eu-repo/semantics/embargoedAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdfEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdfapplication/pdf551083https://patua.iec.gov.br/bitstreams/8d1470e5-35a9-4996-8646-cc09b7281d64/downloadc9a9c128e29cac82a5d7fdf3f4e6da73MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/7ff5d25b-5584-4de9-97ea-9b9bb4c43b3c/download11832eea31b16df8613079d742d61793MD52TEXTEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdf.txtEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdf.txtExtracted texttext/plain2https://patua.iec.gov.br/bitstreams/801e95c8-10cd-4d1a-a701-b80a1a1f5a22/downloade1c06d85ae7b8b032bef47e42e4c08f9MD55THUMBNAILEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdf.jpgEvolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha).pdf.jpgGenerated Thumbnailimage/jpeg3095https://patua.iec.gov.br/bitstreams/3f1e883a-1c49-4153-b6af-90a77769e4fe/download71859d578212107f7f8c49a4ce09d9eeMD56iec/45392022-10-20 22:11:57.648oai:patua.iec.gov.br:iec/4539https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T22:11:57Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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
dc.title.pt_BR.fl_str_mv Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
title Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
spellingShingle Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
Sousa, Rodrigo Petry Corrêa de
Peixes / genética
DNA Recombinante
Estruturas Cromossômicas
Heterocromatina / genética
Ambiente Marinho
Fauna Marinha
Telômero / genética
Elementos de DNA Transponíveis
title_short Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
title_full Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
title_fullStr Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
title_full_unstemmed Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
title_sort Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha)
author Sousa, Rodrigo Petry Corrêa de
author_facet Sousa, Rodrigo Petry Corrêa de
Vasconcelos, Carolina Pinheiro
Rosário, Nayara Furtado do
Oliveira Filho, Aldemir Branco de
Oliveira, Edivaldo Herculano Corrêa de
Cioffi, Marcelo de Bello
Vallinoto, Marcelo
Oliveira, Gláucia Caroline Silva
author_role author
author2 Vasconcelos, Carolina Pinheiro
Rosário, Nayara Furtado do
Oliveira Filho, Aldemir Branco de
Oliveira, Edivaldo Herculano Corrêa de
Cioffi, Marcelo de Bello
Vallinoto, Marcelo
Oliveira, Gláucia Caroline Silva
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Sousa, Rodrigo Petry Corrêa de
Vasconcelos, Carolina Pinheiro
Rosário, Nayara Furtado do
Oliveira Filho, Aldemir Branco de
Oliveira, Edivaldo Herculano Corrêa de
Cioffi, Marcelo de Bello
Vallinoto, Marcelo
Oliveira, Gláucia Caroline Silva
dc.subject.decsPrimary.pt_BR.fl_str_mv Peixes / genética
DNA Recombinante
Estruturas Cromossômicas
Heterocromatina / genética
Ambiente Marinho
Fauna Marinha
Telômero / genética
Elementos de DNA Transponíveis
topic Peixes / genética
DNA Recombinante
Estruturas Cromossômicas
Heterocromatina / genética
Ambiente Marinho
Fauna Marinha
Telômero / genética
Elementos de DNA Transponíveis
description The order Elopiformes includes fish species of medium to large size with a circumglobal distribution, in both the open sea, coastal, and estuarine waters. The Elopiformes are considered an excellent model for evolutionary studies due to their ample adaptive capacity, which allow them to exploit a range of different ecological niches. In this study, we analyzed the karyotype structure and distribution of two classes of repetitive DNA (microsatellites and transposable elements) in two Elopiformes species (Elops smithi and Megalops atlanticus). The results showed that the microsatellite sequences had a very similar distribution in these species, primarily associated to heterochromatin (centromeres and telomeres), suggesting these sequences contribute to the chromosome structure. In contrast, specific signals detected throughout the euchromatic regions indicate that some of these sequences may play a role in the regulation of gene expression. By contrast, the transposable elements presented a distinct distribution in the two species, pointing to a possible interspecific difference in the function of these sequences in the genomes of the two species. Therefore, the comparative genome mapping provides new insights into the structure and organization of these repetitive sequences in the Elopiformes genome.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-06-02T14:41:20Z
dc.date.available.fl_str_mv 2022-06-02T14:41:20Z
dc.date.issued.fl_str_mv 2022
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv Sousa, Rodrigo Petry Corrêa de et al. Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha). Zebrafish, v. 19, n. 1, p. xx, Feb. 2022.
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/4539
dc.identifier.issn.-.fl_str_mv 1557-8542
dc.identifier.doi.-.fl_str_mv 10.1089/zeb.2021.0027
identifier_str_mv Sousa, Rodrigo Petry Corrêa de et al. Evolutionary dynamics of two classes of repetitive DNA in the genomes of two species of Elopiformes (Teleostei, Elopomorpha). Zebrafish, v. 19, n. 1, p. xx, Feb. 2022.
1557-8542
10.1089/zeb.2021.0027
url https://patua.iec.gov.br/handle/iec/4539
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/embargoedAccess
eu_rights_str_mv embargoedAccess
dc.publisher.none.fl_str_mv Mary Ann Liebert
publisher.none.fl_str_mv Mary Ann Liebert
dc.source.none.fl_str_mv reponame:Repositório Digital do Instituto Evandro Chagas (Patuá)
instname:Instituto Evandro Chagas (IEC)
instacron:IEC
instname_str Instituto Evandro Chagas (IEC)
instacron_str IEC
institution IEC
reponame_str Repositório Digital do Instituto Evandro Chagas (Patuá)
collection Repositório Digital do Instituto Evandro Chagas (Patuá)
bitstream.url.fl_str_mv https://patua.iec.gov.br/bitstreams/8d1470e5-35a9-4996-8646-cc09b7281d64/download
https://patua.iec.gov.br/bitstreams/7ff5d25b-5584-4de9-97ea-9b9bb4c43b3c/download
https://patua.iec.gov.br/bitstreams/801e95c8-10cd-4d1a-a701-b80a1a1f5a22/download
https://patua.iec.gov.br/bitstreams/3f1e883a-1c49-4153-b6af-90a77769e4fe/download
bitstream.checksum.fl_str_mv c9a9c128e29cac82a5d7fdf3f4e6da73
11832eea31b16df8613079d742d61793
e1c06d85ae7b8b032bef47e42e4c08f9
71859d578212107f7f8c49a4ce09d9ee
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)
repository.mail.fl_str_mv clariceneta@iec.gov.br || Biblioteca@iec.gov.br
_version_ 1809190045683286016