COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES

Detalhes bibliográficos
Autor(a) principal: SOUZA, Margarida Neves
Data de Publicação: 2015
Outros Autores: ORTIZ, Stéfanie Otowicz, MELLO, Marcelo Martins, OLIVEIRA, Flávio de Mattos, SEVERO, Luiz Carlos, GOEBEL, Cristine Souza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista do Instituto de Medicina Tropical de São Paulo
Texto Completo: https://www.revistas.usp.br/rimtsp/article/view/105536
Resumo: Infection by Candidaspp. is associated with high mortality rates, especially when treatment is not appropriate and/or not immediate. Therefore, it is necessary to correctly identify the genus and species of Candida. The aim of this study was to compare the identification of 89 samples of Candidaspp. by the manual methods germ tube test, auxanogram and chromogenic medium in relation to the ID 32C automated method. The concordances between the methods in ascending order, measured by the Kappa index were: ID 32C with CHROMagar Candida(κ = 0.38), ID 32C with auxanogram (κ = 0.59) and ID 32C with germ tube (κ = 0.9). One of the species identified in this study was C. tropicalis,which demonstrated a sensitivity of 46.2%, a specificity of 95.2%, PPV of 80%, NPV of 81.1%, and an accuracy of 80.9% in tests performed with CHROMagar Candida;and a sensitivity of 76.9%, a specificity of 96.8%, PPV of 90.9%, NPV of 91%, and an accuracy of 91% in the auxanogram tests. Therefore, it is necessary to know the advantages and limitations of methods to choose the best combination between them for a fast and correct identification of Candidaspecies.
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spelling COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES Comparação entre quatro métodos usuais de identificação de espécies de Candida Infection by Candidaspp. is associated with high mortality rates, especially when treatment is not appropriate and/or not immediate. Therefore, it is necessary to correctly identify the genus and species of Candida. The aim of this study was to compare the identification of 89 samples of Candidaspp. by the manual methods germ tube test, auxanogram and chromogenic medium in relation to the ID 32C automated method. The concordances between the methods in ascending order, measured by the Kappa index were: ID 32C with CHROMagar Candida(κ = 0.38), ID 32C with auxanogram (κ = 0.59) and ID 32C with germ tube (κ = 0.9). One of the species identified in this study was C. tropicalis,which demonstrated a sensitivity of 46.2%, a specificity of 95.2%, PPV of 80%, NPV of 81.1%, and an accuracy of 80.9% in tests performed with CHROMagar Candida;and a sensitivity of 76.9%, a specificity of 96.8%, PPV of 90.9%, NPV of 91%, and an accuracy of 91% in the auxanogram tests. Therefore, it is necessary to know the advantages and limitations of methods to choose the best combination between them for a fast and correct identification of Candidaspecies. A infecção por Candidaspp. está associada com alta mortalidade, principalmente quando o tratamento não é adequado, nem imediato. Assim, a correta identificação do gênero e espécie é necessária. O objetivo deste trabalho foi comparar 89 amostras de Candidaspp. pelos métodos manuais prova do tubo germinativo, auxanograma e CHROMagar em relação ao método automatizado ID 32C. As concordâncias entre os métodos em ordem crescente, medidas pelo coeficiente de Kappa, foram: ID 32C com CHROMagar Candida(κ = 0,38), ID 32C com auxanograma (κ = 0,59) e ID 32C com tubo germinativo (κ = 0,9). Uma das espécies identificadas neste trabalho foi a C. tropicalis, que demonstrou uma sensibilidade de 46,2%, especificidade de 95,2%, VPP de 80%, VPN de 81,1% e acurácia de 80,9% nos testes com CHROMagar Candidae uma sensibilidade de 76,9%, especificidade de 96,8%, VPP de 90,9%, VPN de 91% e acurácia de 91% nos testes de auxanograma. Portanto, o conhecimento das vantagens e limitações dos métodos é necessário para a escolha da melhor combinação entre os mesmos visando uma rápida e correta identificação das espécies de Candida. Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo2015-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/rimtsp/article/view/105536Revista do Instituto de Medicina Tropical de São Paulo; Vol. 57 No. 4 (2015); 281-287Revista do Instituto de Medicina Tropical de São Paulo; Vol. 57 Núm. 4 (2015); 281-287Revista do Instituto de Medicina Tropical de São Paulo; v. 57 n. 4 (2015); 281-2871678-99460036-4665reponame:Revista do Instituto de Medicina Tropical de São Pauloinstname:Instituto de Medicina Tropical (IMT)instacron:IMTenghttps://www.revistas.usp.br/rimtsp/article/view/105536/104192Copyright (c) 2018 Revista do Instituto de Medicina Tropical de São Pauloinfo:eu-repo/semantics/openAccessSOUZA, Margarida NevesORTIZ, Stéfanie OtowiczMELLO, Marcelo MartinsOLIVEIRA, Flávio de MattosSEVERO, Luiz CarlosGOEBEL, Cristine Souza2015-10-09T12:54:23Zoai:revistas.usp.br:article/105536Revistahttp://www.revistas.usp.br/rimtsp/indexPUBhttps://www.revistas.usp.br/rimtsp/oai||revimtsp@usp.br1678-99460036-4665opendoar:2022-12-13T16:52:33.110835Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)true
dc.title.none.fl_str_mv COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
Comparação entre quatro métodos usuais de identificação de espécies de Candida
title COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
spellingShingle COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
SOUZA, Margarida Neves
title_short COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
title_full COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
title_fullStr COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
title_full_unstemmed COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
title_sort COMPARISON BETWEEN FOUR USUAL METHODS OF IDENTIFICATION OF CandidaSPECIES
author SOUZA, Margarida Neves
author_facet SOUZA, Margarida Neves
ORTIZ, Stéfanie Otowicz
MELLO, Marcelo Martins
OLIVEIRA, Flávio de Mattos
SEVERO, Luiz Carlos
GOEBEL, Cristine Souza
author_role author
author2 ORTIZ, Stéfanie Otowicz
MELLO, Marcelo Martins
OLIVEIRA, Flávio de Mattos
SEVERO, Luiz Carlos
GOEBEL, Cristine Souza
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv SOUZA, Margarida Neves
ORTIZ, Stéfanie Otowicz
MELLO, Marcelo Martins
OLIVEIRA, Flávio de Mattos
SEVERO, Luiz Carlos
GOEBEL, Cristine Souza
description Infection by Candidaspp. is associated with high mortality rates, especially when treatment is not appropriate and/or not immediate. Therefore, it is necessary to correctly identify the genus and species of Candida. The aim of this study was to compare the identification of 89 samples of Candidaspp. by the manual methods germ tube test, auxanogram and chromogenic medium in relation to the ID 32C automated method. The concordances between the methods in ascending order, measured by the Kappa index were: ID 32C with CHROMagar Candida(κ = 0.38), ID 32C with auxanogram (κ = 0.59) and ID 32C with germ tube (κ = 0.9). One of the species identified in this study was C. tropicalis,which demonstrated a sensitivity of 46.2%, a specificity of 95.2%, PPV of 80%, NPV of 81.1%, and an accuracy of 80.9% in tests performed with CHROMagar Candida;and a sensitivity of 76.9%, a specificity of 96.8%, PPV of 90.9%, NPV of 91%, and an accuracy of 91% in the auxanogram tests. Therefore, it is necessary to know the advantages and limitations of methods to choose the best combination between them for a fast and correct identification of Candidaspecies.
publishDate 2015
dc.date.none.fl_str_mv 2015-08-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/105536
url https://www.revistas.usp.br/rimtsp/article/view/105536
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/105536/104192
dc.rights.driver.fl_str_mv Copyright (c) 2018 Revista do Instituto de Medicina Tropical de São Paulo
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2018 Revista do Instituto de Medicina Tropical de São Paulo
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
dc.source.none.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo; Vol. 57 No. 4 (2015); 281-287
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 57 Núm. 4 (2015); 281-287
Revista do Instituto de Medicina Tropical de São Paulo; v. 57 n. 4 (2015); 281-287
1678-9946
0036-4665
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