Path2Models: large-scale generation of computational models from biochemical pathway maps

Detalhes bibliográficos
Autor(a) principal: Büchel, Finja
Data de Publicação: 2013
Outros Autores: Rodriguez, Nicolas, Swainston, Neil, Wrzodek, Clemens, Czauderna, Tobias, Keller, Roland, Mittag, Florian, Schubert, Michael, Glont, Mihai, Golebiewski, Martin, van Iersel, Martijn, Keating, Sarah, Rall, Matthias, Wybrow, Michael, Hermjakob, Henning, Hucka, Michael, Kell, Douglas B, Müller, Wolfgang, Mendes, Pedro, Zell, Andreas, Chaouiya, Claudine, Saez-Rodriguez, Julio, Schreiber, Falk, Laibe, Camille, Dräger, Andreas, Le Novère, Nicolas
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/436
Resumo: Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.
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spelling Path2Models: large-scale generation of computational models from biochemical pathway mapsModular rate lawConstraint based modelsLogical modelsSBGNSBMLSystems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.US National Institute of General Medical Sciences grant: (GM070923), Federal Ministry of Education and Research (BMBF, German) grants: (0315756, 01GS08134), Marie Curie International Outgoing Fellowship, US National Institute of General Medical Sciences grant: (GM080219), BBSRC grant: (BB/J019259/1), EMBL-EBI, nnovative Medicines Initiative Joint Undertaking under grant agreement: (115156)BioMed CentralARCABüchel, FinjaRodriguez, NicolasSwainston, NeilWrzodek, ClemensCzauderna, TobiasKeller, RolandMittag, FlorianSchubert, MichaelGlont, MihaiGolebiewski, Martinvan Iersel, MartijnKeating, SarahRall, MatthiasWybrow, MichaelHermjakob, HenningHucka, MichaelKell, Douglas BMüller, WolfgangMendes, PedroZell, AndreasChaouiya, ClaudineSaez-Rodriguez, JulioSchreiber, FalkLaibe, CamilleDräger, AndreasLe Novère, Nicolas2015-10-23T15:00:27Z2013-11-012013-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/436engBüchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :11610.1186/1752-0509-7-116info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:34:49Zoai:arca.igc.gulbenkian.pt:10400.7/436Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:43.498297Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Path2Models: large-scale generation of computational models from biochemical pathway maps
title Path2Models: large-scale generation of computational models from biochemical pathway maps
spellingShingle Path2Models: large-scale generation of computational models from biochemical pathway maps
Büchel, Finja
Modular rate law
Constraint based models
Logical models
SBGN
SBML
title_short Path2Models: large-scale generation of computational models from biochemical pathway maps
title_full Path2Models: large-scale generation of computational models from biochemical pathway maps
title_fullStr Path2Models: large-scale generation of computational models from biochemical pathway maps
title_full_unstemmed Path2Models: large-scale generation of computational models from biochemical pathway maps
title_sort Path2Models: large-scale generation of computational models from biochemical pathway maps
author Büchel, Finja
author_facet Büchel, Finja
Rodriguez, Nicolas
Swainston, Neil
Wrzodek, Clemens
Czauderna, Tobias
Keller, Roland
Mittag, Florian
Schubert, Michael
Glont, Mihai
Golebiewski, Martin
van Iersel, Martijn
Keating, Sarah
Rall, Matthias
Wybrow, Michael
Hermjakob, Henning
Hucka, Michael
Kell, Douglas B
Müller, Wolfgang
Mendes, Pedro
Zell, Andreas
Chaouiya, Claudine
Saez-Rodriguez, Julio
Schreiber, Falk
Laibe, Camille
Dräger, Andreas
Le Novère, Nicolas
author_role author
author2 Rodriguez, Nicolas
Swainston, Neil
Wrzodek, Clemens
Czauderna, Tobias
Keller, Roland
Mittag, Florian
Schubert, Michael
Glont, Mihai
Golebiewski, Martin
van Iersel, Martijn
Keating, Sarah
Rall, Matthias
Wybrow, Michael
Hermjakob, Henning
Hucka, Michael
Kell, Douglas B
Müller, Wolfgang
Mendes, Pedro
Zell, Andreas
Chaouiya, Claudine
Saez-Rodriguez, Julio
Schreiber, Falk
Laibe, Camille
Dräger, Andreas
Le Novère, Nicolas
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Büchel, Finja
Rodriguez, Nicolas
Swainston, Neil
Wrzodek, Clemens
Czauderna, Tobias
Keller, Roland
Mittag, Florian
Schubert, Michael
Glont, Mihai
Golebiewski, Martin
van Iersel, Martijn
Keating, Sarah
Rall, Matthias
Wybrow, Michael
Hermjakob, Henning
Hucka, Michael
Kell, Douglas B
Müller, Wolfgang
Mendes, Pedro
Zell, Andreas
Chaouiya, Claudine
Saez-Rodriguez, Julio
Schreiber, Falk
Laibe, Camille
Dräger, Andreas
Le Novère, Nicolas
dc.subject.por.fl_str_mv Modular rate law
Constraint based models
Logical models
SBGN
SBML
topic Modular rate law
Constraint based models
Logical models
SBGN
SBML
description Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.
publishDate 2013
dc.date.none.fl_str_mv 2013-11-01
2013-11-01T00:00:00Z
2015-10-23T15:00:27Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/436
url http://hdl.handle.net/10400.7/436
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Büchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :116
10.1186/1752-0509-7-116
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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