Path2Models: large-scale generation of computational models from biochemical pathway maps
Autor(a) principal: | |
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Data de Publicação: | 2013 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.7/436 |
Resumo: | Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data. |
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Path2Models: large-scale generation of computational models from biochemical pathway mapsModular rate lawConstraint based modelsLogical modelsSBGNSBMLSystems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.US National Institute of General Medical Sciences grant: (GM070923), Federal Ministry of Education and Research (BMBF, German) grants: (0315756, 01GS08134), Marie Curie International Outgoing Fellowship, US National Institute of General Medical Sciences grant: (GM080219), BBSRC grant: (BB/J019259/1), EMBL-EBI, nnovative Medicines Initiative Joint Undertaking under grant agreement: (115156)BioMed CentralARCABüchel, FinjaRodriguez, NicolasSwainston, NeilWrzodek, ClemensCzauderna, TobiasKeller, RolandMittag, FlorianSchubert, MichaelGlont, MihaiGolebiewski, Martinvan Iersel, MartijnKeating, SarahRall, MatthiasWybrow, MichaelHermjakob, HenningHucka, MichaelKell, Douglas BMüller, WolfgangMendes, PedroZell, AndreasChaouiya, ClaudineSaez-Rodriguez, JulioSchreiber, FalkLaibe, CamilleDräger, AndreasLe Novère, Nicolas2015-10-23T15:00:27Z2013-11-012013-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/436engBüchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :11610.1186/1752-0509-7-116info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:34:49Zoai:arca.igc.gulbenkian.pt:10400.7/436Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:43.498297Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
title |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
spellingShingle |
Path2Models: large-scale generation of computational models from biochemical pathway maps Büchel, Finja Modular rate law Constraint based models Logical models SBGN SBML |
title_short |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
title_full |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
title_fullStr |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
title_full_unstemmed |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
title_sort |
Path2Models: large-scale generation of computational models from biochemical pathway maps |
author |
Büchel, Finja |
author_facet |
Büchel, Finja Rodriguez, Nicolas Swainston, Neil Wrzodek, Clemens Czauderna, Tobias Keller, Roland Mittag, Florian Schubert, Michael Glont, Mihai Golebiewski, Martin van Iersel, Martijn Keating, Sarah Rall, Matthias Wybrow, Michael Hermjakob, Henning Hucka, Michael Kell, Douglas B Müller, Wolfgang Mendes, Pedro Zell, Andreas Chaouiya, Claudine Saez-Rodriguez, Julio Schreiber, Falk Laibe, Camille Dräger, Andreas Le Novère, Nicolas |
author_role |
author |
author2 |
Rodriguez, Nicolas Swainston, Neil Wrzodek, Clemens Czauderna, Tobias Keller, Roland Mittag, Florian Schubert, Michael Glont, Mihai Golebiewski, Martin van Iersel, Martijn Keating, Sarah Rall, Matthias Wybrow, Michael Hermjakob, Henning Hucka, Michael Kell, Douglas B Müller, Wolfgang Mendes, Pedro Zell, Andreas Chaouiya, Claudine Saez-Rodriguez, Julio Schreiber, Falk Laibe, Camille Dräger, Andreas Le Novère, Nicolas |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
ARCA |
dc.contributor.author.fl_str_mv |
Büchel, Finja Rodriguez, Nicolas Swainston, Neil Wrzodek, Clemens Czauderna, Tobias Keller, Roland Mittag, Florian Schubert, Michael Glont, Mihai Golebiewski, Martin van Iersel, Martijn Keating, Sarah Rall, Matthias Wybrow, Michael Hermjakob, Henning Hucka, Michael Kell, Douglas B Müller, Wolfgang Mendes, Pedro Zell, Andreas Chaouiya, Claudine Saez-Rodriguez, Julio Schreiber, Falk Laibe, Camille Dräger, Andreas Le Novère, Nicolas |
dc.subject.por.fl_str_mv |
Modular rate law Constraint based models Logical models SBGN SBML |
topic |
Modular rate law Constraint based models Logical models SBGN SBML |
description |
Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-11-01 2013-11-01T00:00:00Z 2015-10-23T15:00:27Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.7/436 |
url |
http://hdl.handle.net/10400.7/436 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Büchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :116 10.1186/1752-0509-7-116 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
BioMed Central |
publisher.none.fl_str_mv |
BioMed Central |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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