Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10451/55865 |
Resumo: | Carnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense and this can confound the identification of post-glacial colonization patterns in this group. In this study we used genome-wide data (using genotyping by sequencing [GBS]) to reconstruct the phylogeographic history of a widespread carnivore, the red fox (Vulpes vulpes), by investigating broad-scale patterns of genomic variation, differentiation and admixture amongst contemporary populations in Europe. Using 15,003 single nucleotide polymorphisms (SNPs) from 524 individuals allowed us to identify the importance of refugial regions for the red fox in terms of endemism (e.g., Iberia). In addition, we tested multiple post-glacial recolonization scenarios of previously glaciated regions during the Last Glacial Maximum using an Approximate Bayesian Computation (ABC) approach that were unresolved from previous studies. This allowed us to identify the role of admixture from multiple source population post-Younger Dryas in the case of Scandinavia and ancient land-bridges in the colonization of the British Isles. A natural colonization of Ireland was deemed more likely than an ancient human-mediated introduction as has previously been proposed and potentially points to a larger mammalian community on the island in the early post-glacial period. Using genome-wide data has allowed us to tease apart broad-scale patterns of structure and diversity in a widespread carnivore in Europe that was not evident from using more limited marker sets and provides a foundation for next-generation phylogeographic studies in other non-model species. |
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Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in EuropeCarnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense and this can confound the identification of post-glacial colonization patterns in this group. In this study we used genome-wide data (using genotyping by sequencing [GBS]) to reconstruct the phylogeographic history of a widespread carnivore, the red fox (Vulpes vulpes), by investigating broad-scale patterns of genomic variation, differentiation and admixture amongst contemporary populations in Europe. Using 15,003 single nucleotide polymorphisms (SNPs) from 524 individuals allowed us to identify the importance of refugial regions for the red fox in terms of endemism (e.g., Iberia). In addition, we tested multiple post-glacial recolonization scenarios of previously glaciated regions during the Last Glacial Maximum using an Approximate Bayesian Computation (ABC) approach that were unresolved from previous studies. This allowed us to identify the role of admixture from multiple source population post-Younger Dryas in the case of Scandinavia and ancient land-bridges in the colonization of the British Isles. A natural colonization of Ireland was deemed more likely than an ancient human-mediated introduction as has previously been proposed and potentially points to a larger mammalian community on the island in the early post-glacial period. Using genome-wide data has allowed us to tease apart broad-scale patterns of structure and diversity in a widespread carnivore in Europe that was not evident from using more limited marker sets and provides a foundation for next-generation phylogeographic studies in other non-model species.WileyRepositório da Universidade de LisboaMcDevitt, Allan D.Coscia, IlariaBrowett, Samuel S.Ruiz‐González, AritzStatham, Mark J.Ruczyńska, IwonaRoberts, LiamStojak, JoannaFrantz, Alain C.Norén, KarinÅgren, Erik O.Learmount, JanePinto Basto, MafaldaFernandes, CStuart, PeterTosh, David G.Sindicic, MagdaAndreanszky, TiborIsomursu, MarjaPanek, MarekKorolev, AndreyOkhlopkov, Innokentiy M.Saveljev, Alexander P.Pokorny, BoštjanFlajšman, KatarinaHarrison, Stephen W. R.Lobkov, VladimirĆirović, DuškoMullins, JacintaPertoldi, CinoRandi, EttoreSacks, Benjamin N.Kowalczyk, RafałWójcik, Jan M.2023-02-01T01:31:04Z2022-022022-02-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/55865engMcDevitt AD, Coscia I, Browett SS, Ruiz-González A, Statham MJ, Ruczyńska I, Roberts L, Stojak J, Frantz AC, Norén K, Ågren EO, Learmount J, Basto M, Fernandes C, Stuart P, Tosh DG, Sindicic M, Andreanszky T, Isomursu M, Panek M, Korolev A, Okhlopkov IM, Saveljev AP, Pokorny B, Flajšman K, Harrison SWR, Lobkov V, Ćirović D, Mullins J, Pertoldi C, Randi E, Sacks BN, Kowalczyk R, Wójcik JM. Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe. Mol Ecol. 2022 Feb;31(3):993-1006. doi: 10.1111/mec.16276. Epub 2021 Nov 26. PMID: 34775636.10.1111/mec.16276info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T17:03:03Zoai:repositorio.ul.pt:10451/55865Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:06:25.787323Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
title |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
spellingShingle |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe McDevitt, Allan D. |
title_short |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
title_full |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
title_fullStr |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
title_full_unstemmed |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
title_sort |
Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox ( Vulpes vulpes ), in Europe |
author |
McDevitt, Allan D. |
author_facet |
McDevitt, Allan D. Coscia, Ilaria Browett, Samuel S. Ruiz‐González, Aritz Statham, Mark J. Ruczyńska, Iwona Roberts, Liam Stojak, Joanna Frantz, Alain C. Norén, Karin Ågren, Erik O. Learmount, Jane Pinto Basto, Mafalda Fernandes, C Stuart, Peter Tosh, David G. Sindicic, Magda Andreanszky, Tibor Isomursu, Marja Panek, Marek Korolev, Andrey Okhlopkov, Innokentiy M. Saveljev, Alexander P. Pokorny, Boštjan Flajšman, Katarina Harrison, Stephen W. R. Lobkov, Vladimir Ćirović, Duško Mullins, Jacinta Pertoldi, Cino Randi, Ettore Sacks, Benjamin N. Kowalczyk, Rafał Wójcik, Jan M. |
author_role |
author |
author2 |
Coscia, Ilaria Browett, Samuel S. Ruiz‐González, Aritz Statham, Mark J. Ruczyńska, Iwona Roberts, Liam Stojak, Joanna Frantz, Alain C. Norén, Karin Ågren, Erik O. Learmount, Jane Pinto Basto, Mafalda Fernandes, C Stuart, Peter Tosh, David G. Sindicic, Magda Andreanszky, Tibor Isomursu, Marja Panek, Marek Korolev, Andrey Okhlopkov, Innokentiy M. Saveljev, Alexander P. Pokorny, Boštjan Flajšman, Katarina Harrison, Stephen W. R. Lobkov, Vladimir Ćirović, Duško Mullins, Jacinta Pertoldi, Cino Randi, Ettore Sacks, Benjamin N. Kowalczyk, Rafał Wójcik, Jan M. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório da Universidade de Lisboa |
dc.contributor.author.fl_str_mv |
McDevitt, Allan D. Coscia, Ilaria Browett, Samuel S. Ruiz‐González, Aritz Statham, Mark J. Ruczyńska, Iwona Roberts, Liam Stojak, Joanna Frantz, Alain C. Norén, Karin Ågren, Erik O. Learmount, Jane Pinto Basto, Mafalda Fernandes, C Stuart, Peter Tosh, David G. Sindicic, Magda Andreanszky, Tibor Isomursu, Marja Panek, Marek Korolev, Andrey Okhlopkov, Innokentiy M. Saveljev, Alexander P. Pokorny, Boštjan Flajšman, Katarina Harrison, Stephen W. R. Lobkov, Vladimir Ćirović, Duško Mullins, Jacinta Pertoldi, Cino Randi, Ettore Sacks, Benjamin N. Kowalczyk, Rafał Wójcik, Jan M. |
description |
Carnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense and this can confound the identification of post-glacial colonization patterns in this group. In this study we used genome-wide data (using genotyping by sequencing [GBS]) to reconstruct the phylogeographic history of a widespread carnivore, the red fox (Vulpes vulpes), by investigating broad-scale patterns of genomic variation, differentiation and admixture amongst contemporary populations in Europe. Using 15,003 single nucleotide polymorphisms (SNPs) from 524 individuals allowed us to identify the importance of refugial regions for the red fox in terms of endemism (e.g., Iberia). In addition, we tested multiple post-glacial recolonization scenarios of previously glaciated regions during the Last Glacial Maximum using an Approximate Bayesian Computation (ABC) approach that were unresolved from previous studies. This allowed us to identify the role of admixture from multiple source population post-Younger Dryas in the case of Scandinavia and ancient land-bridges in the colonization of the British Isles. A natural colonization of Ireland was deemed more likely than an ancient human-mediated introduction as has previously been proposed and potentially points to a larger mammalian community on the island in the early post-glacial period. Using genome-wide data has allowed us to tease apart broad-scale patterns of structure and diversity in a widespread carnivore in Europe that was not evident from using more limited marker sets and provides a foundation for next-generation phylogeographic studies in other non-model species. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-02 2022-02-01T00:00:00Z 2023-02-01T01:31:04Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10451/55865 |
url |
http://hdl.handle.net/10451/55865 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
McDevitt AD, Coscia I, Browett SS, Ruiz-González A, Statham MJ, Ruczyńska I, Roberts L, Stojak J, Frantz AC, Norén K, Ågren EO, Learmount J, Basto M, Fernandes C, Stuart P, Tosh DG, Sindicic M, Andreanszky T, Isomursu M, Panek M, Korolev A, Okhlopkov IM, Saveljev AP, Pokorny B, Flajšman K, Harrison SWR, Lobkov V, Ćirović D, Mullins J, Pertoldi C, Randi E, Sacks BN, Kowalczyk R, Wójcik JM. Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe. Mol Ecol. 2022 Feb;31(3):993-1006. doi: 10.1111/mec.16276. Epub 2021 Nov 26. PMID: 34775636. 10.1111/mec.16276 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Wiley |
publisher.none.fl_str_mv |
Wiley |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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