Bacteriophage-encoded depolymerases: their diversity and biotechnological applications

Detalhes bibliográficos
Autor(a) principal: Pires, Diana Priscila Penso
Data de Publicação: 2016
Outros Autores: Oliveira, Hugo Alexandre Mendes, Melo, Luís D. R., Sillankorva, Sanna, Azeredo, Joana
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/40516
Resumo: Bacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance against bacterial biofilms, since the degradation of extracellular polymeric substances by depolymerases might facilitate the access of phages to the cells within different biofilm layers. Since the diversity of phage depolymerases is not yet fully explored, this is the first review gathering information about all the depolymerases encoded by fully sequenced phages. Overall, in this study, 160 putative depolymerases, including sialidases, levanases, xylosidases, dextranases, hyaluronidases, peptidases as well as pectate/pectin lyases, were found in 143 phages (43 Myoviridae, 47 Siphoviridae, 37 Podoviridae, and 16 unclassified) infecting 24 genera of bacteria. We further provide information about the main applications of phage depolymerases, which can comprise areas as diverse as medical, chemical, or food-processing industry.
id RCAP_664145d37608395d776804e460728abb
oai_identifier_str oai:repositorium.sdum.uminho.pt:1822/40516
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Bacteriophage-encoded depolymerases: their diversity and biotechnological applicationsBacteriophagesPhage depolymerasesCapsular polysaccharidesBiofilmsScience & TechnologyBacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance against bacterial biofilms, since the degradation of extracellular polymeric substances by depolymerases might facilitate the access of phages to the cells within different biofilm layers. Since the diversity of phage depolymerases is not yet fully explored, this is the first review gathering information about all the depolymerases encoded by fully sequenced phages. Overall, in this study, 160 putative depolymerases, including sialidases, levanases, xylosidases, dextranases, hyaluronidases, peptidases as well as pectate/pectin lyases, were found in 143 phages (43 Myoviridae, 47 Siphoviridae, 37 Podoviridae, and 16 unclassified) infecting 24 genera of bacteria. We further provide information about the main applications of phage depolymerases, which can comprise areas as diverse as medical, chemical, or food-processing industry.DPP acknowledges the financial support from the Portuguese Foundation for Science and Technology (FCT) through the grant SFRH/BD/76440/2011. SS is an FCT investigator (IF/01413/2013). The authors also thank FCT for the Strategic Project of the UID/BIO/04469/2013 unit, FCT and European Union funds (FEDER/COMPETE) for the project RECI/BBB-EBI/0179/2012 (FCOMP-01-0124-FEDER027462).SpringerUniversidade do MinhoPires, Diana Priscila PensoOliveira, Hugo Alexandre MendesMelo, Luís D. R.Sillankorva, SannaAzeredo, Joana2016-032016-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/40516engPires, Diana; Oliveira, Hugo; Melo, L.; Sillankorva, Sanna; Azeredo, Joana, Bacteriophage-encoded depolymerases: their diversity and biotechnological applications. Applied Microbiology and Biotechnology, 100(5), 2141-2151, 20160175-75981432-061410.1007/s00253-015-7247-026767986http://www.springer.com/chemistry/biotechnology/journal/253info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:17:47Zoai:repositorium.sdum.uminho.pt:1822/40516Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:10:28.364780Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
title Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
spellingShingle Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
Pires, Diana Priscila Penso
Bacteriophages
Phage depolymerases
Capsular polysaccharides
Biofilms
Science & Technology
title_short Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
title_full Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
title_fullStr Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
title_full_unstemmed Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
title_sort Bacteriophage-encoded depolymerases: their diversity and biotechnological applications
author Pires, Diana Priscila Penso
author_facet Pires, Diana Priscila Penso
Oliveira, Hugo Alexandre Mendes
Melo, Luís D. R.
Sillankorva, Sanna
Azeredo, Joana
author_role author
author2 Oliveira, Hugo Alexandre Mendes
Melo, Luís D. R.
Sillankorva, Sanna
Azeredo, Joana
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Pires, Diana Priscila Penso
Oliveira, Hugo Alexandre Mendes
Melo, Luís D. R.
Sillankorva, Sanna
Azeredo, Joana
dc.subject.por.fl_str_mv Bacteriophages
Phage depolymerases
Capsular polysaccharides
Biofilms
Science & Technology
topic Bacteriophages
Phage depolymerases
Capsular polysaccharides
Biofilms
Science & Technology
description Bacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance against bacterial biofilms, since the degradation of extracellular polymeric substances by depolymerases might facilitate the access of phages to the cells within different biofilm layers. Since the diversity of phage depolymerases is not yet fully explored, this is the first review gathering information about all the depolymerases encoded by fully sequenced phages. Overall, in this study, 160 putative depolymerases, including sialidases, levanases, xylosidases, dextranases, hyaluronidases, peptidases as well as pectate/pectin lyases, were found in 143 phages (43 Myoviridae, 47 Siphoviridae, 37 Podoviridae, and 16 unclassified) infecting 24 genera of bacteria. We further provide information about the main applications of phage depolymerases, which can comprise areas as diverse as medical, chemical, or food-processing industry.
publishDate 2016
dc.date.none.fl_str_mv 2016-03
2016-03-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/40516
url http://hdl.handle.net/1822/40516
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Pires, Diana; Oliveira, Hugo; Melo, L.; Sillankorva, Sanna; Azeredo, Joana, Bacteriophage-encoded depolymerases: their diversity and biotechnological applications. Applied Microbiology and Biotechnology, 100(5), 2141-2151, 2016
0175-7598
1432-0614
10.1007/s00253-015-7247-0
26767986
http://www.springer.com/chemistry/biotechnology/journal/253
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799132533503295488