In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

Detalhes bibliográficos
Autor(a) principal: Blanco-Míguez, Aitor
Data de Publicação: 2019
Outros Autores: Fdez-Riverola, Florentino, Lourenço, Anália, Sánchez, Borja
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/59019
Resumo: This work reports on a large-scale potential neuropeptide activity screening in human gut microbiomes deposited in public databases. In our experimental approach, the sequences of the bioactive peptides collected in the MAHMI database, mainly predicted as immunomodulatory or antitumoral, were crossed with those of the neuroactive/digestive peptides. From 91,325,790 potential bioactive peptides, only 581 returned a match when crossed against the 5949 neuroactive peptides from the NeuroPep database and the 15 digestive hormones. Relevant bacterial taxa, such as Ruminococcus sp., Clostridium sp. were found among the main producers of the matching sequences, and many of the matches corresponded to adiponectin and the hormone produced by adipocites, which is involved in glucose homeostasis. These results show, for the first time, the presence of potentially bioactive peptides produced by gut microbiota members over the nervous cells, most notably, peptides with already predicted immunomodulatory or anti-inflammatory activity. Classical (Lactobacillus sp.) and next-generation (Faecalibacterium sp.) probiotics are shown to produce these peptides, which are proposed as a potential mechanism of action of psychobiotics. Our previous experimental results showed that many of these peptides were active when incubated with immune cells, such as dendritic cells, so their effect over the nervous system innervating the gut mucosa holds significant potential and should be explored.
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spelling In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiotaGut microbiotaBioactive peptidesMetaproteomesPeptidomesNeuropeptidesAnti-inflammatoryImmunomodulatoryMicrobiomeCiências Agrárias::Biotecnologia Agrária e AlimentarCiências Médicas::Biotecnologia MédicaEngenharia e Tecnologia::Biotecnologia IndustrialScience & TechnologyThis work reports on a large-scale potential neuropeptide activity screening in human gut microbiomes deposited in public databases. In our experimental approach, the sequences of the bioactive peptides collected in the MAHMI database, mainly predicted as immunomodulatory or antitumoral, were crossed with those of the neuroactive/digestive peptides. From 91,325,790 potential bioactive peptides, only 581 returned a match when crossed against the 5949 neuroactive peptides from the NeuroPep database and the 15 digestive hormones. Relevant bacterial taxa, such as Ruminococcus sp., Clostridium sp. were found among the main producers of the matching sequences, and many of the matches corresponded to adiponectin and the hormone produced by adipocites, which is involved in glucose homeostasis. These results show, for the first time, the presence of potentially bioactive peptides produced by gut microbiota members over the nervous cells, most notably, peptides with already predicted immunomodulatory or anti-inflammatory activity. Classical (Lactobacillus sp.) and next-generation (Faecalibacterium sp.) probiotics are shown to produce these peptides, which are proposed as a potential mechanism of action of psychobiotics. Our previous experimental results showed that many of these peptides were active when incubated with immune cells, such as dendritic cells, so their effect over the nervous system innervating the gut mucosa holds significant potential and should be explored.Spanish “Programa Estatal de Investigación, Desarrollo e Inovación Orientada a los Retos de la Sociedad” (Grant AGL2016-78311-R); the Asociación Española Contra el Cancer (“Obtención de péptidos bioactivos contra el Cáncer Colo-Rectal a partir de secuencias genéticas de microbiomas intestinales”, grant PS-2016). This study was also supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER006684). SING group thanks CITI (Centro de Investigación, Transferencia e Innovación) from University of Vigo for hosting its IT infrastructure. This work was partially supported by the Asturias Regional Plan I+D+i for research groups (FYCYT-IDI/2018/000236) and by the Consellería de Educación, Universidades e Formación Profesional (Xunta de Galicia) under the scope of the strategic funding of ED431C2018/55-GRC Competitive Reference Groupinfo:eu-repo/semantics/publishedVersionElsevierUniversidade do MinhoBlanco-Míguez, AitorFdez-Riverola, FlorentinoLourenço, AnáliaSánchez, Borja2019-052019-05-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/59019engBlanco-Míguez, Aitor; Fdez-Riverola, Florentino; Lourenço, Anália; Sánchez, Borja, In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota. Food Research International, 119, 221-226, 20190963-996910.1016/j.foodres.2019.01.06930884651https://www.sciencedirect.com/science/article/pii/S096399691930078Xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:48:24Zoai:repositorium.sdum.uminho.pt:1822/59019Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:46:39.096576Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
title In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
spellingShingle In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
Blanco-Míguez, Aitor
Gut microbiota
Bioactive peptides
Metaproteomes
Peptidomes
Neuropeptides
Anti-inflammatory
Immunomodulatory
Microbiome
Ciências Agrárias::Biotecnologia Agrária e Alimentar
Ciências Médicas::Biotecnologia Médica
Engenharia e Tecnologia::Biotecnologia Industrial
Science & Technology
title_short In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
title_full In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
title_fullStr In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
title_full_unstemmed In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
title_sort In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
author Blanco-Míguez, Aitor
author_facet Blanco-Míguez, Aitor
Fdez-Riverola, Florentino
Lourenço, Anália
Sánchez, Borja
author_role author
author2 Fdez-Riverola, Florentino
Lourenço, Anália
Sánchez, Borja
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Blanco-Míguez, Aitor
Fdez-Riverola, Florentino
Lourenço, Anália
Sánchez, Borja
dc.subject.por.fl_str_mv Gut microbiota
Bioactive peptides
Metaproteomes
Peptidomes
Neuropeptides
Anti-inflammatory
Immunomodulatory
Microbiome
Ciências Agrárias::Biotecnologia Agrária e Alimentar
Ciências Médicas::Biotecnologia Médica
Engenharia e Tecnologia::Biotecnologia Industrial
Science & Technology
topic Gut microbiota
Bioactive peptides
Metaproteomes
Peptidomes
Neuropeptides
Anti-inflammatory
Immunomodulatory
Microbiome
Ciências Agrárias::Biotecnologia Agrária e Alimentar
Ciências Médicas::Biotecnologia Médica
Engenharia e Tecnologia::Biotecnologia Industrial
Science & Technology
description This work reports on a large-scale potential neuropeptide activity screening in human gut microbiomes deposited in public databases. In our experimental approach, the sequences of the bioactive peptides collected in the MAHMI database, mainly predicted as immunomodulatory or antitumoral, were crossed with those of the neuroactive/digestive peptides. From 91,325,790 potential bioactive peptides, only 581 returned a match when crossed against the 5949 neuroactive peptides from the NeuroPep database and the 15 digestive hormones. Relevant bacterial taxa, such as Ruminococcus sp., Clostridium sp. were found among the main producers of the matching sequences, and many of the matches corresponded to adiponectin and the hormone produced by adipocites, which is involved in glucose homeostasis. These results show, for the first time, the presence of potentially bioactive peptides produced by gut microbiota members over the nervous cells, most notably, peptides with already predicted immunomodulatory or anti-inflammatory activity. Classical (Lactobacillus sp.) and next-generation (Faecalibacterium sp.) probiotics are shown to produce these peptides, which are proposed as a potential mechanism of action of psychobiotics. Our previous experimental results showed that many of these peptides were active when incubated with immune cells, such as dendritic cells, so their effect over the nervous system innervating the gut mucosa holds significant potential and should be explored.
publishDate 2019
dc.date.none.fl_str_mv 2019-05
2019-05-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/59019
url http://hdl.handle.net/1822/59019
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Blanco-Míguez, Aitor; Fdez-Riverola, Florentino; Lourenço, Anália; Sánchez, Borja, In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota. Food Research International, 119, 221-226, 2019
0963-9969
10.1016/j.foodres.2019.01.069
30884651
https://www.sciencedirect.com/science/article/pii/S096399691930078X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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