The influence of bioclimate on soil microbial communities of cork oak

Detalhes bibliográficos
Autor(a) principal: Costa, Daniela
Data de Publicação: 2022
Outros Autores: Tavares, Rui Manuel, Baptista, Paula, Lino-Neto, Teresa
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10198/29255
Resumo: Background: Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forests under different edaphoclimatic conditions were described by using a metabarcoding strategy targeting ITS2 and 16S barcodes. Results: A total of 11,974 fungal and 12,010 bacterial amplicon sequence variants (ASVs) were obtained, revealing rich and diverse microbial communities associated with different cork oak forests. Bioclimate was described as the major factor influencing variability in these communities (or bioclimates/cork oak forest for fungal community), followed by boron and granulometry. Also, pH explained variation of fungal communities, while C:N ratio contributed to bacterial variation. Fungal and bacterial biomarker genera for specific bioclimates were described. Their co-occurrence network revealed the existence of a complex and delicate balance among microbial communities. Conclusions: The findings revealed that bacterial communities are more likely to be affected by different edaphoclimatic conditions than fungal communities, also predicting a higher impact of climate change on bacterial communities. The integration of cork oak fungal and bacterial microbiota under different bioclimates could be further explored to provide information about useful interactions for increasing cork oak forest sustainability in a world subject to climate changes.
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spelling The influence of bioclimate on soil microbial communities of cork oakSoil microbiomeITS16SCork oakBioclimateBackground: Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forests under different edaphoclimatic conditions were described by using a metabarcoding strategy targeting ITS2 and 16S barcodes. Results: A total of 11,974 fungal and 12,010 bacterial amplicon sequence variants (ASVs) were obtained, revealing rich and diverse microbial communities associated with different cork oak forests. Bioclimate was described as the major factor influencing variability in these communities (or bioclimates/cork oak forest for fungal community), followed by boron and granulometry. Also, pH explained variation of fungal communities, while C:N ratio contributed to bacterial variation. Fungal and bacterial biomarker genera for specific bioclimates were described. Their co-occurrence network revealed the existence of a complex and delicate balance among microbial communities. Conclusions: The findings revealed that bacterial communities are more likely to be affected by different edaphoclimatic conditions than fungal communities, also predicting a higher impact of climate change on bacterial communities. The integration of cork oak fungal and bacterial microbiota under different bioclimates could be further explored to provide information about useful interactions for increasing cork oak forest sustainability in a world subject to climate changes.This work was supported by FEDER funds through COMPETE (Programa Operacional Factores de Competitividade) and by national funds by FCT (Fundação para a Ciência e a Tecnologia) in the framework of the project POCI-01-0145- FEDER-028635, as well as for financial support to BioISI (UIDB/04046/2020), CBMA (UIDB/04050/2020) and CIMO (UID/AGR/00690/2020) by national funds by FCT/MCTES/PIDDAC. D. Costa thanks FCT for PhD grant SFRH/ BD/120516/2016 and COVID/BD/151779/2021.Springer NatureBiblioteca Digital do IPBCosta, DanielaTavares, Rui ManuelBaptista, PaulaLino-Neto, Teresa2024-01-18T10:11:40Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10198/29255engCosta, Daniela; Tavares, Rui Manuel; Baptista, Paula; Lino-Neto, Teresa (2022). The influence of bioclimate on soil microbial communities of cork oak. BMC Microbiology. eISSN 1471-2180. 22:1, p. 1-1710.1186/s12866-022-02574-21471-2180info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-24T01:19:28Zoai:bibliotecadigital.ipb.pt:10198/29255Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:56:38.572593Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv The influence of bioclimate on soil microbial communities of cork oak
title The influence of bioclimate on soil microbial communities of cork oak
spellingShingle The influence of bioclimate on soil microbial communities of cork oak
Costa, Daniela
Soil microbiome
ITS
16S
Cork oak
Bioclimate
title_short The influence of bioclimate on soil microbial communities of cork oak
title_full The influence of bioclimate on soil microbial communities of cork oak
title_fullStr The influence of bioclimate on soil microbial communities of cork oak
title_full_unstemmed The influence of bioclimate on soil microbial communities of cork oak
title_sort The influence of bioclimate on soil microbial communities of cork oak
author Costa, Daniela
author_facet Costa, Daniela
Tavares, Rui Manuel
Baptista, Paula
Lino-Neto, Teresa
author_role author
author2 Tavares, Rui Manuel
Baptista, Paula
Lino-Neto, Teresa
author2_role author
author
author
dc.contributor.none.fl_str_mv Biblioteca Digital do IPB
dc.contributor.author.fl_str_mv Costa, Daniela
Tavares, Rui Manuel
Baptista, Paula
Lino-Neto, Teresa
dc.subject.por.fl_str_mv Soil microbiome
ITS
16S
Cork oak
Bioclimate
topic Soil microbiome
ITS
16S
Cork oak
Bioclimate
description Background: Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forests under different edaphoclimatic conditions were described by using a metabarcoding strategy targeting ITS2 and 16S barcodes. Results: A total of 11,974 fungal and 12,010 bacterial amplicon sequence variants (ASVs) were obtained, revealing rich and diverse microbial communities associated with different cork oak forests. Bioclimate was described as the major factor influencing variability in these communities (or bioclimates/cork oak forest for fungal community), followed by boron and granulometry. Also, pH explained variation of fungal communities, while C:N ratio contributed to bacterial variation. Fungal and bacterial biomarker genera for specific bioclimates were described. Their co-occurrence network revealed the existence of a complex and delicate balance among microbial communities. Conclusions: The findings revealed that bacterial communities are more likely to be affected by different edaphoclimatic conditions than fungal communities, also predicting a higher impact of climate change on bacterial communities. The integration of cork oak fungal and bacterial microbiota under different bioclimates could be further explored to provide information about useful interactions for increasing cork oak forest sustainability in a world subject to climate changes.
publishDate 2022
dc.date.none.fl_str_mv 2022
2022-01-01T00:00:00Z
2024-01-18T10:11:40Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10198/29255
url http://hdl.handle.net/10198/29255
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Costa, Daniela; Tavares, Rui Manuel; Baptista, Paula; Lino-Neto, Teresa (2022). The influence of bioclimate on soil microbial communities of cork oak. BMC Microbiology. eISSN 1471-2180. 22:1, p. 1-17
10.1186/s12866-022-02574-2
1471-2180
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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