Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/63866 |
Resumo: | The data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x. |
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Genome-guided analysis allows the identification of novel physiological traits in Trichococcus speciesComparative genomicsProtein domainsHalophilicPsychrophilic1,3-propanediol13-propanediolScience & TechnologyThe data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x.The genus Trichococcus currently contains nine species: T. flocculiformis, T. pasteurii, T. palustris, T. collinsii, T. patagoniensis, T. ilyis, T. paludicola, T. alkaliphilus, and T. shcherbakoviae. In general, Trichococcus species can degrade a wide range of carbohydrates. However, only T. pasteurii and a non-characterized strain of Trichococcus, strain ES5, have the capacity of converting glycerol to mainly 1,3-propanediol. Comparative genomic analysis of Trichococcus species provides the opportunity to further explore the physiological potential and uncover novel properties of this genus.This research was supported by the European Research Council under the European Union’s Seventh Framework Programme / ERC Grant Agreement (323009) and by the Gravitation grant (024.002.002) of the Netherlands Ministry of Education, Culture and Science. The work conducted by the U.S. Department of Energy Joint Genome Institute (DOE-JGI), a DOE Office of Science User Facility, was supported by the Office of Science of the DOE under Contract No. DE-AC02-05CH11231. The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.info:eu-repo/semantics/publishedVersionBMCUniversidade do MinhoStrepis, NikolaosNaranjo, Henry D.Meier-Kolthoff, JanGöker, MarkusShapiro, NicoleKyrpides, NikosKlenk, Hans-PeterSchaap, Peter J.Stams, Alfons Johannes MariaSousa, Diana Zita Machado20202020-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/63866engStrepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter; Schaap, Peter J.; Stams, A. J. M.; Sousa, Diana Z., Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics, 21(1), 24-24, 20201471-216410.1186/s12864-019-6410-x31914924http://www.biomedcentral.com/bmcgenomicsinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:18:00Zoai:repositorium.sdum.uminho.pt:1822/63866Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:10:43.759205Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
title |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
spellingShingle |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species Strepis, Nikolaos Comparative genomics Protein domains Halophilic Psychrophilic 1,3-propanediol 1 3-propanediol Science & Technology |
title_short |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
title_full |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
title_fullStr |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
title_full_unstemmed |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
title_sort |
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species |
author |
Strepis, Nikolaos |
author_facet |
Strepis, Nikolaos Naranjo, Henry D. Meier-Kolthoff, Jan Göker, Markus Shapiro, Nicole Kyrpides, Nikos Klenk, Hans-Peter Schaap, Peter J. Stams, Alfons Johannes Maria Sousa, Diana Zita Machado |
author_role |
author |
author2 |
Naranjo, Henry D. Meier-Kolthoff, Jan Göker, Markus Shapiro, Nicole Kyrpides, Nikos Klenk, Hans-Peter Schaap, Peter J. Stams, Alfons Johannes Maria Sousa, Diana Zita Machado |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Strepis, Nikolaos Naranjo, Henry D. Meier-Kolthoff, Jan Göker, Markus Shapiro, Nicole Kyrpides, Nikos Klenk, Hans-Peter Schaap, Peter J. Stams, Alfons Johannes Maria Sousa, Diana Zita Machado |
dc.subject.por.fl_str_mv |
Comparative genomics Protein domains Halophilic Psychrophilic 1,3-propanediol 1 3-propanediol Science & Technology |
topic |
Comparative genomics Protein domains Halophilic Psychrophilic 1,3-propanediol 1 3-propanediol Science & Technology |
description |
The data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020 2020-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/63866 |
url |
http://hdl.handle.net/1822/63866 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Strepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter; Schaap, Peter J.; Stams, A. J. M.; Sousa, Diana Z., Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics, 21(1), 24-24, 2020 1471-2164 10.1186/s12864-019-6410-x 31914924 http://www.biomedcentral.com/bmcgenomics |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
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openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
BMC |
publisher.none.fl_str_mv |
BMC |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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