Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

Detalhes bibliográficos
Autor(a) principal: Strepis, Nikolaos
Data de Publicação: 2020
Outros Autores: Naranjo, Henry D., Meier-Kolthoff, Jan, Göker, Markus, Shapiro, Nicole, Kyrpides, Nikos, Klenk, Hans-Peter, Schaap, Peter J., Stams, Alfons Johannes Maria, Sousa, Diana Zita Machado
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/63866
Resumo: The data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x.
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spelling Genome-guided analysis allows the identification of novel physiological traits in Trichococcus speciesComparative genomicsProtein domainsHalophilicPsychrophilic1,3-propanediol13-propanediolScience & TechnologyThe data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x.The genus Trichococcus currently contains nine species: T. flocculiformis, T. pasteurii, T. palustris, T. collinsii, T. patagoniensis, T. ilyis, T. paludicola, T. alkaliphilus, and T. shcherbakoviae. In general, Trichococcus species can degrade a wide range of carbohydrates. However, only T. pasteurii and a non-characterized strain of Trichococcus, strain ES5, have the capacity of converting glycerol to mainly 1,3-propanediol. Comparative genomic analysis of Trichococcus species provides the opportunity to further explore the physiological potential and uncover novel properties of this genus.This research was supported by the European Research Council under the European Union’s Seventh Framework Programme / ERC Grant Agreement (323009) and by the Gravitation grant (024.002.002) of the Netherlands Ministry of Education, Culture and Science. The work conducted by the U.S. Department of Energy Joint Genome Institute (DOE-JGI), a DOE Office of Science User Facility, was supported by the Office of Science of the DOE under Contract No. DE-AC02-05CH11231. The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.info:eu-repo/semantics/publishedVersionBMCUniversidade do MinhoStrepis, NikolaosNaranjo, Henry D.Meier-Kolthoff, JanGöker, MarkusShapiro, NicoleKyrpides, NikosKlenk, Hans-PeterSchaap, Peter J.Stams, Alfons Johannes MariaSousa, Diana Zita Machado20202020-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/63866engStrepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter; Schaap, Peter J.; Stams, A. J. M.; Sousa, Diana Z., Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics, 21(1), 24-24, 20201471-216410.1186/s12864-019-6410-x31914924http://www.biomedcentral.com/bmcgenomicsinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:18:00Zoai:repositorium.sdum.uminho.pt:1822/63866Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:10:43.759205Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
title Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
spellingShingle Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Strepis, Nikolaos
Comparative genomics
Protein domains
Halophilic
Psychrophilic
1,3-propanediol
1
3-propanediol
Science & Technology
title_short Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
title_full Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
title_fullStr Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
title_full_unstemmed Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
title_sort Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
author Strepis, Nikolaos
author_facet Strepis, Nikolaos
Naranjo, Henry D.
Meier-Kolthoff, Jan
Göker, Markus
Shapiro, Nicole
Kyrpides, Nikos
Klenk, Hans-Peter
Schaap, Peter J.
Stams, Alfons Johannes Maria
Sousa, Diana Zita Machado
author_role author
author2 Naranjo, Henry D.
Meier-Kolthoff, Jan
Göker, Markus
Shapiro, Nicole
Kyrpides, Nikos
Klenk, Hans-Peter
Schaap, Peter J.
Stams, Alfons Johannes Maria
Sousa, Diana Zita Machado
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Strepis, Nikolaos
Naranjo, Henry D.
Meier-Kolthoff, Jan
Göker, Markus
Shapiro, Nicole
Kyrpides, Nikos
Klenk, Hans-Peter
Schaap, Peter J.
Stams, Alfons Johannes Maria
Sousa, Diana Zita Machado
dc.subject.por.fl_str_mv Comparative genomics
Protein domains
Halophilic
Psychrophilic
1,3-propanediol
1
3-propanediol
Science & Technology
topic Comparative genomics
Protein domains
Halophilic
Psychrophilic
1,3-propanediol
1
3-propanediol
Science & Technology
description The data from this study are available in the manuscript and additional file. Genomic data are deposited in public databases (accession numbers are provided in Additional File 1: Table S1). The genomic sequence data of Trichococcus strain ES5 that supports the findings of this study have been deposited in GenBank with accession codes GCA_900067165.1, GCF_900067165.1. Supplementary information accompanies this paper at https://doi.org/10. 1186/s12864-019-6410-x.
publishDate 2020
dc.date.none.fl_str_mv 2020
2020-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/63866
url http://hdl.handle.net/1822/63866
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Strepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter; Schaap, Peter J.; Stams, A. J. M.; Sousa, Diana Z., Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics, 21(1), 24-24, 2020
1471-2164
10.1186/s12864-019-6410-x
31914924
http://www.biomedcentral.com/bmcgenomics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BMC
publisher.none.fl_str_mv BMC
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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