Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás

Detalhes bibliográficos
Autor(a) principal: Silva, Nathânia Dábilla Alves
Data de Publicação: 2016
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFG
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/5995
Resumo: The norovirus (NoVs) are important viral causative agents of acute gastroenteritis (AGE), affecting individuals of all ages in distinct parts of the word; however, the highest morbi-mortality rates occur mainly in children under five years of age and the elderly. The aim of this study was to to screening NoV by Polymerase Chain Reaction Post Reverse Transcription (RT-qPCR) and real-time (RT-qPCR) in fecal and nasal swab of children up to six years of age, with and without AGE symptoms. Samples were obtained at the Materno Infantil Hospital, from May/2014 to May/2015. Secretor status of children was also determined by enzyme immunoassay and genotyping (FUT2 gene) from the sediment of nasal swab epithelial cells. A global positivity index of 17% (37/219) for NoV in feces, and from these positive children, 48.6% (18/37) had AGE symptoms. Mean viral load in fecal samples was 2.59 x 1010 CG/g from symptomatic and 1.37 x 109 CG/g in asymptomatic. A higher positivity rate (70%) was observed GII NoV, compared to GI NoV (30%) and a higher positivity in children up to 24 month old (67.5%), although not statistically significant. As for the secretor status of children positive for NoV in fecal samples, 94.6% positive secretory status. The NoV were detected in practically every month of the study, and no particular pattern of circulation in relation to dry or rainy seasons was observed. Most children positive for NoV (70%) had the record they have received at least the first dose of the vaccine against Rotavirus, being the highest viral load detected among vaccinated children. The NoV RNA was detected in 8.7% of nasal swab samples of the children and of these, 58% had AGE symptoms. The mean viral load in swab samples from symptomatic children was 2.10 x 108 and in the asymptomatic children was 2.41 x 107 CG/mL. A high NoV genotype variability was found in the study (GI.2, GI.3, GI.5, GII.3, GII.4 and GII.6), with a predominance of GII.4 (28.6%), with this being the first report of NoV GI.5 in Brazil. The data obtained in this study reveal a high frequency, viral load, and genetic variability of NoVs among children attended in a hospital of Goiânia, Goiás. The results are important for a better understanding of NoV epidemiology in nosocomial environment, and may constitute useful information on the advent of the development of an effective vaccine. The viral load in nasal swab samples is a novel data that may contribute for the elucidation of a possible alternative rout of NoV transmission.
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spelling Souza, Menira Borges de Lima Dias ehttp://lattes.cnpq.br/0054562567103606Souza, Menira Borges de Lima Dias eFiaccadori, Fabíola SouzaCardoso, Divina das Dores de Paulahttp://lattes.cnpq.br/4254783054420402Silva, Nathânia Dábilla Alves2016-08-25T13:38:53Z2016-04-13DÁBILLA, N. A. S. Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás.. 2016. 103 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2016.http://repositorio.bc.ufg.br/tede/handle/tede/5995The norovirus (NoVs) are important viral causative agents of acute gastroenteritis (AGE), affecting individuals of all ages in distinct parts of the word; however, the highest morbi-mortality rates occur mainly in children under five years of age and the elderly. The aim of this study was to to screening NoV by Polymerase Chain Reaction Post Reverse Transcription (RT-qPCR) and real-time (RT-qPCR) in fecal and nasal swab of children up to six years of age, with and without AGE symptoms. Samples were obtained at the Materno Infantil Hospital, from May/2014 to May/2015. Secretor status of children was also determined by enzyme immunoassay and genotyping (FUT2 gene) from the sediment of nasal swab epithelial cells. A global positivity index of 17% (37/219) for NoV in feces, and from these positive children, 48.6% (18/37) had AGE symptoms. Mean viral load in fecal samples was 2.59 x 1010 CG/g from symptomatic and 1.37 x 109 CG/g in asymptomatic. A higher positivity rate (70%) was observed GII NoV, compared to GI NoV (30%) and a higher positivity in children up to 24 month old (67.5%), although not statistically significant. As for the secretor status of children positive for NoV in fecal samples, 94.6% positive secretory status. The NoV were detected in practically every month of the study, and no particular pattern of circulation in relation to dry or rainy seasons was observed. Most children positive for NoV (70%) had the record they have received at least the first dose of the vaccine against Rotavirus, being the highest viral load detected among vaccinated children. The NoV RNA was detected in 8.7% of nasal swab samples of the children and of these, 58% had AGE symptoms. The mean viral load in swab samples from symptomatic children was 2.10 x 108 and in the asymptomatic children was 2.41 x 107 CG/mL. A high NoV genotype variability was found in the study (GI.2, GI.3, GI.5, GII.3, GII.4 and GII.6), with a predominance of GII.4 (28.6%), with this being the first report of NoV GI.5 in Brazil. The data obtained in this study reveal a high frequency, viral load, and genetic variability of NoVs among children attended in a hospital of Goiânia, Goiás. The results are important for a better understanding of NoV epidemiology in nosocomial environment, and may constitute useful information on the advent of the development of an effective vaccine. The viral load in nasal swab samples is a novel data that may contribute for the elucidation of a possible alternative rout of NoV transmission.Os norovírus (NoVs) são importantes agentes virais causadores de gastroenterite aguda (GEA), atingindo indivíduos de todas as idades em diversas partes do mundo, porém os maiores índices de morbimortalidade ocorrem principalmente nas crianças menores de cinco anos e idosos. O objetivo do presente estudo foi realizar a pesquisa de NoV, através da Reação em Cadeia pela Polimerase Pós-Transcrição Reversa (RT-PCR) e por tempo real (RT-qPCR) em amostras fecais e swab nasal de crianças com até seis anos de idade, com e sem sintomas de GEA. As amostras foram coletadas no Hospital Materno Infantil, entre maio/2014 e maio/2015. Procedeu-se ainda à determinação do status secretor das crianças, por Ensaio Imunoenzimático e genotipagem (gene FUT2), em sedimento de células epiteliais do swab nasal. Foi observado um índice de positividade global de 17% (37/219) para NoV nas fezes, sendo que destas crianças positivas, 48,6% (18/37) apresentavam sintomas de GEA. A carga viral média nas amostras de fezes de crianças com sintomas foi 2,59 x 1010 CG/g e 1,37 x 109 CG/g nas assintomáticas. Observou-se maior positividade para NoV GII (70%) quando comparado ao GI (30%) e maior positividade nas crianças de até 24 meses de idade (67,5%), entretanto este dado não foi estatisticamente significativo. Quanto ao status secretor das crianças positivas para NoV nas fezes, 94,6% status secretor positivo. Os NoV foram detectados em praticamente todos meses do estudo, não sendo observado padrão de circulação definido em relação às estações seca e chuvosa. A maioria das crianças positivas para NoV (70%) tinham o registro de terem recebido pelo menos a primeira dose da vacina contra Rotavírus, sendo a carga viral mais elevada detectada entre crianças vacinadas. O RNA de NoV foi ainda detectado em 8,7% (19/219) das amostras de swab nasal das crianças e destas, 58% apresentavam sintomas de GEA. A carga viral média nas amostras de swab das crianças sintomáticas foi 2,10 x 108 CG/mL e nas assintomáticas 2,41 x 107 CG/mL. Foi observada elevada variabilidade de genótipos de NoV no estudo (GI.2, GI.3, GI.5, GII.3, GII.4 e GII.6), com maior predominância de GII.4 (28,6%), sendo este o primeiro relato de NoV GI.5 no Brasil. Os dados obtidos neste estudo revelam elevada frequência, carga viral e variabilidade genética de NoVs entre crianças atendidas em um hospital de Goiânia, Goiás. Os resultados são importantes para o melhor entendimento da epidemiologia dos NoVs em ambiente nosocomial, e poderão ser uteis como informação no advento do desenvolvimento de uma vacina eficaz. A determinação da carga viral de NoV em xii amostras de swab nasal é um dado novo, podendo este contribuir para a elucidação de uma possível rota alternativa de transmissão dos NoV.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2016-08-25T13:37:26Z No. of bitstreams: 2 Dissertação - Nathânia Dábilla Alves Silva - 2016.pdf: 1926312 bytes, checksum: 08f15d1c8a44d1ed6118f432a6917f2d (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-08-25T13:38:53Z (GMT) No. of bitstreams: 2 Dissertação - Nathânia Dábilla Alves Silva - 2016.pdf: 1926312 bytes, checksum: 08f15d1c8a44d1ed6118f432a6917f2d (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2016-08-25T13:38:53Z (GMT). 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dc.title.por.fl_str_mv Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
dc.title.alternative.eng.fl_str_mv Assessment of occurrence, molecular characterization and determination of viral load norovirus in stool samples and nasal swabs from children attended at a hospital in Goiânia, Goiás
title Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
spellingShingle Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
Silva, Nathânia Dábilla Alves
Norovírus
Crianças
Ambiente nosocomial
Gastroenterite viral
Swab nasal
Carga viral
Norovirus
Children
Nosocomial environment
Viral gastroenteritis
Viral load
Nasal swab
CIENCIAS BIOLOGICAS::PARASITOLOGIA
title_short Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
title_full Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
title_fullStr Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
title_full_unstemmed Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
title_sort Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás
author Silva, Nathânia Dábilla Alves
author_facet Silva, Nathânia Dábilla Alves
author_role author
dc.contributor.advisor1.fl_str_mv Souza, Menira Borges de Lima Dias e
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/0054562567103606
dc.contributor.referee1.fl_str_mv Souza, Menira Borges de Lima Dias e
dc.contributor.referee2.fl_str_mv Fiaccadori, Fabíola Souza
dc.contributor.referee3.fl_str_mv Cardoso, Divina das Dores de Paula
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4254783054420402
dc.contributor.author.fl_str_mv Silva, Nathânia Dábilla Alves
contributor_str_mv Souza, Menira Borges de Lima Dias e
Souza, Menira Borges de Lima Dias e
Fiaccadori, Fabíola Souza
Cardoso, Divina das Dores de Paula
dc.subject.por.fl_str_mv Norovírus
Crianças
Ambiente nosocomial
Gastroenterite viral
Swab nasal
Carga viral
topic Norovírus
Crianças
Ambiente nosocomial
Gastroenterite viral
Swab nasal
Carga viral
Norovirus
Children
Nosocomial environment
Viral gastroenteritis
Viral load
Nasal swab
CIENCIAS BIOLOGICAS::PARASITOLOGIA
dc.subject.eng.fl_str_mv Norovirus
Children
Nosocomial environment
Viral gastroenteritis
Viral load
Nasal swab
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::PARASITOLOGIA
description The norovirus (NoVs) are important viral causative agents of acute gastroenteritis (AGE), affecting individuals of all ages in distinct parts of the word; however, the highest morbi-mortality rates occur mainly in children under five years of age and the elderly. The aim of this study was to to screening NoV by Polymerase Chain Reaction Post Reverse Transcription (RT-qPCR) and real-time (RT-qPCR) in fecal and nasal swab of children up to six years of age, with and without AGE symptoms. Samples were obtained at the Materno Infantil Hospital, from May/2014 to May/2015. Secretor status of children was also determined by enzyme immunoassay and genotyping (FUT2 gene) from the sediment of nasal swab epithelial cells. A global positivity index of 17% (37/219) for NoV in feces, and from these positive children, 48.6% (18/37) had AGE symptoms. Mean viral load in fecal samples was 2.59 x 1010 CG/g from symptomatic and 1.37 x 109 CG/g in asymptomatic. A higher positivity rate (70%) was observed GII NoV, compared to GI NoV (30%) and a higher positivity in children up to 24 month old (67.5%), although not statistically significant. As for the secretor status of children positive for NoV in fecal samples, 94.6% positive secretory status. The NoV were detected in practically every month of the study, and no particular pattern of circulation in relation to dry or rainy seasons was observed. Most children positive for NoV (70%) had the record they have received at least the first dose of the vaccine against Rotavirus, being the highest viral load detected among vaccinated children. The NoV RNA was detected in 8.7% of nasal swab samples of the children and of these, 58% had AGE symptoms. The mean viral load in swab samples from symptomatic children was 2.10 x 108 and in the asymptomatic children was 2.41 x 107 CG/mL. A high NoV genotype variability was found in the study (GI.2, GI.3, GI.5, GII.3, GII.4 and GII.6), with a predominance of GII.4 (28.6%), with this being the first report of NoV GI.5 in Brazil. The data obtained in this study reveal a high frequency, viral load, and genetic variability of NoVs among children attended in a hospital of Goiânia, Goiás. The results are important for a better understanding of NoV epidemiology in nosocomial environment, and may constitute useful information on the advent of the development of an effective vaccine. The viral load in nasal swab samples is a novel data that may contribute for the elucidation of a possible alternative rout of NoV transmission.
publishDate 2016
dc.date.accessioned.fl_str_mv 2016-08-25T13:38:53Z
dc.date.issued.fl_str_mv 2016-04-13
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv DÁBILLA, N. A. S. Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás.. 2016. 103 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2016.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/5995
identifier_str_mv DÁBILLA, N. A. S. Avaliação da ocorrência, caracterização molecular e determinação da carga viral de Norovírus em amostras de fezes e swab nasal provenientes de crianças atendidas em um hospital de Goiânia, Goiás.. 2016. 103 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2016.
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dc.publisher.none.fl_str_mv Universidade Federal de Goiás
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dc.publisher.department.fl_str_mv Instituto de Patologia Tropical e Saúde Pública - IPTSP (RG)
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