Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC

Detalhes bibliográficos
Autor(a) principal: Novaes, Carolina Ribeiro Diniz Boaventura
Data de Publicação: 2014
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/9835
Resumo: Genotypic variations knowledge is an important tool that can point to the best approach for genetic resources maintenance, for both conservation and breeding purposes. To analyze and compare the phenotypic and genetic variation of wild subpopulations of Eugenia dysenterica DC., a fruity tree, 25 subpopulations were sampled in five states of the Brazilian Cerrado. Within each subpopulation, six trees were sampled and twenty fruits (maternal siblings) collected. Five fruits of each family were evaluated for morphometric variables of fruits and seeds. Twenty seeds of each family were randomly sown in each one of four blocks, five seeds per plot, established in a common garden experiment. Hierarchical model analysis of variance and variance components estimation were performed for fruit, seeds and early development traits and QST were estimated for early development traits. Four individuals per family were genotyped using nine microsatellite loci. Significant phenotypic and genotypic variations were observed both between subpopulations and between families within subpopulations. The highest proportion of the variance was found among families. Heritability estimates were 0.23 and 0.27 for growth rate and number of leaves and greater than 0.34 for other traits, indicating high potential for selective gain. Rapid early development is important for seedlings commercial production. Above ground biomass represented 15% of total biomass. Subpopulations are significantly structured for root length, height and diameter growth rates (QST 0.34, 0.23 and 0.20), but weak structure was establish for biomass and seedling emergence (QST <0.04). It has high genetic diversity, with average expected heterozigosity of 0.642. The mating system was mainly outcrossing (ta = 0.73), with high genetic differentiation between subpopulations (θP = 0.198), similar to previous studies. QST - FST contrasts were not significant for sixteen out of eighteen traits, suggesting genetic drift as the main source of phenotypic differentiation. Even though seedling emergence average time and root system fresh mass genetic similarity is granted to uniform selection. Quantitative and genetic distances clustered two distinct groups spatially structured, with respect to the Corumbá and São Bartolomeu river valley, in addition to the Chapada dos Veadeiros and Vão do Paranã region. Subpopulation 21 (Cocalinho-MT) quantitatively diverged from the two clusters. An in vivo collection of E. dysenterica was established for ex situ conservation. Genetic characterization and sampling extent suggest that the collection portrays well the cagaiteira’s wild population for selection purposes.
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spelling Chaves , Lázaro Joséhttp://lattes.cnpq.br/9990967290797379Telles, Mariana Pires de Camposhttp://lattes.cnpq.br/4648436798023532Chaves, Lázaro JoséZucchi, Maria ImaculadaGrattapaglia, DarioCoelho, Alexandre Siqueira GuedesGanga, Rita Maria Devóshttp://lattes.cnpq.br/5640015140973531Novaes, Carolina Ribeiro Diniz Boaventura2019-07-16T12:35:34Z2014-10-16NOVAES, Carolina Ribeiro Diniz Boaventura. Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC. 2014. 223 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/9835Genotypic variations knowledge is an important tool that can point to the best approach for genetic resources maintenance, for both conservation and breeding purposes. To analyze and compare the phenotypic and genetic variation of wild subpopulations of Eugenia dysenterica DC., a fruity tree, 25 subpopulations were sampled in five states of the Brazilian Cerrado. Within each subpopulation, six trees were sampled and twenty fruits (maternal siblings) collected. Five fruits of each family were evaluated for morphometric variables of fruits and seeds. Twenty seeds of each family were randomly sown in each one of four blocks, five seeds per plot, established in a common garden experiment. Hierarchical model analysis of variance and variance components estimation were performed for fruit, seeds and early development traits and QST were estimated for early development traits. Four individuals per family were genotyped using nine microsatellite loci. Significant phenotypic and genotypic variations were observed both between subpopulations and between families within subpopulations. The highest proportion of the variance was found among families. Heritability estimates were 0.23 and 0.27 for growth rate and number of leaves and greater than 0.34 for other traits, indicating high potential for selective gain. Rapid early development is important for seedlings commercial production. Above ground biomass represented 15% of total biomass. Subpopulations are significantly structured for root length, height and diameter growth rates (QST 0.34, 0.23 and 0.20), but weak structure was establish for biomass and seedling emergence (QST <0.04). It has high genetic diversity, with average expected heterozigosity of 0.642. The mating system was mainly outcrossing (ta = 0.73), with high genetic differentiation between subpopulations (θP = 0.198), similar to previous studies. QST - FST contrasts were not significant for sixteen out of eighteen traits, suggesting genetic drift as the main source of phenotypic differentiation. Even though seedling emergence average time and root system fresh mass genetic similarity is granted to uniform selection. Quantitative and genetic distances clustered two distinct groups spatially structured, with respect to the Corumbá and São Bartolomeu river valley, in addition to the Chapada dos Veadeiros and Vão do Paranã region. Subpopulation 21 (Cocalinho-MT) quantitatively diverged from the two clusters. An in vivo collection of E. dysenterica was established for ex situ conservation. Genetic characterization and sampling extent suggest that the collection portrays well the cagaiteira’s wild population for selection purposes.Conhecer as variações genotípicas presentes em populações constitui importante ferramenta para escolher a melhor conduta para o manejo de recursos genéticos, tanto para conservação quanto para o melhoramento. Com o objetivo de analisar e comparar a proporção da variação fenotípica e genética entre subpopulações naturais da árvore frutífera Eugenia dysenterica DC., foram amostradas 25 subpopulações em cinco estados do Cerrado brasileiro. Dentro de cada subpopulação, seis árvores foram amostradas e vinte frutos por matriz (irmãos maternos) coletados. Cinco frutos de cada matriz foram avaliados quanto a variáveis morfométricas de frutos e sementes. Vinte sementes de cada família foram semeadas ao acaso em quatro blocos, com cinco sementes por parcela, constituindo um teste de procedências e progênies. Foram realizadas a análise de variância e obtidas estimativas de seus componentes pelo modelo hierárquico, para caracteres de frutos, sementes e desenvolvimento inicial, além de estimativas de QST para caracteres de desenvolvimento inicial. Quatro indivíduos por família foram genotipados utilizando nove locos microssatélites. Variação fenotípica e genotípica significativa foi verificada entre subpopulações e entre famílias dentro de subpopulações, com a maior proporção verificada entre famílias. As estimativas de herdabilidade foram de 0,23 e 0,27 para taxa de crescimento e número de folhas e maior que 0,34 para os outros caracteres avaliados, que indicam bom potencial de seleção. A seleção de progênies com rápido desenvolvimento inicial é importante para a produção comercial de mudas. A biomassa alocada acima do solo representou 15% da biomassa total. As subpopulações estão significativamente estruturadas quanto ao comprimento da raiz, taxas de crescimento em altura e diâmetro (QST 0,34, 0,23 e 0,20), mas quanto à biomassa e emergência das plântulas estão fracamente estruturadas (QST < 0,04). O sistema de cruzamento é misto, com predominância de alogamia (ta=0,73), a diversidade genética elevada, com heterozigosidade média esperada de 0,642 e a diferenciação genética entre as subpopulações é alta (θP=0,198), semelhante ao encontrado em estudos anteriores. O contraste QST - FST foi não significativo para 16 dos 18 caracteres avaliados, o que indica prevalência da deriva genética como causa da diferenciação genotípica, embora para tempo médio de emergência das plântulas e massa verde do sistema radicular a similaridade genética possa ser explicada pela seleção uniforme. A subpopulação 21 (Cocalinho-MT) divergiu fenotipicamente mais das demais, que formam dois grupos distintos, inclusive pelas distâncias genéticas. Os dois grupos são estruturados espacialmente, cuja divisão geográfica corresponde ao vale dos rios Corumbá e São Bartolomeu, à Chapada dos Veadeiros e ao Vão do Paranã. Uma coleção in vivo de E. dysenterica para conservação ex situ foi estabelecida. A caracterização genética da coleção e a abrangência da coleta realizada sugerem que a amostragem foi adequada para iniciar um programa de seleção da espécie.Submitted by Marlene Santos (marlene.bc.ufg@gmail.com) on 2019-07-15T19:41:38Z No. of bitstreams: 2 Tese - Carolina Ribeiro Diniz Boaventura Novaes - 2014.pdf: 9822177 bytes, checksum: d6520632900f04d777f5baf4532aa2d8 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2019-07-16T12:35:34Z (GMT) No. of bitstreams: 2 Tese - Carolina Ribeiro Diniz Boaventura Novaes - 2014.pdf: 9822177 bytes, checksum: d6520632900f04d777f5baf4532aa2d8 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2019-07-16T12:35:34Z (GMT). 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dc.title.eng.fl_str_mv Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
dc.title.alternative.eng.fl_str_mv Variability and genetic divergence of quantitative traits and neutral markers for populations of Eugenia dysenterica DC
title Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
spellingShingle Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
Novaes, Carolina Ribeiro Diniz Boaventura
Cagaiteira
Conservação ex situ
QST
Cerrado
Ex situ conservation
SILVICULTURA::GENETICA E MELHORAMENTO FLORESTAL
title_short Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
title_full Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
title_fullStr Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
title_full_unstemmed Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
title_sort Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC
author Novaes, Carolina Ribeiro Diniz Boaventura
author_facet Novaes, Carolina Ribeiro Diniz Boaventura
author_role author
dc.contributor.advisor1.fl_str_mv Chaves , Lázaro José
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/9990967290797379
dc.contributor.advisor-co1.fl_str_mv Telles, Mariana Pires de Campos
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/4648436798023532
dc.contributor.referee1.fl_str_mv Chaves, Lázaro José
dc.contributor.referee2.fl_str_mv Zucchi, Maria Imaculada
dc.contributor.referee3.fl_str_mv Grattapaglia, Dario
dc.contributor.referee4.fl_str_mv Coelho, Alexandre Siqueira Guedes
dc.contributor.referee5.fl_str_mv Ganga, Rita Maria Devós
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/5640015140973531
dc.contributor.author.fl_str_mv Novaes, Carolina Ribeiro Diniz Boaventura
contributor_str_mv Chaves , Lázaro José
Telles, Mariana Pires de Campos
Chaves, Lázaro José
Zucchi, Maria Imaculada
Grattapaglia, Dario
Coelho, Alexandre Siqueira Guedes
Ganga, Rita Maria Devós
dc.subject.por.fl_str_mv Cagaiteira
Conservação ex situ
QST
Cerrado
topic Cagaiteira
Conservação ex situ
QST
Cerrado
Ex situ conservation
SILVICULTURA::GENETICA E MELHORAMENTO FLORESTAL
dc.subject.eng.fl_str_mv Ex situ conservation
dc.subject.cnpq.fl_str_mv SILVICULTURA::GENETICA E MELHORAMENTO FLORESTAL
description Genotypic variations knowledge is an important tool that can point to the best approach for genetic resources maintenance, for both conservation and breeding purposes. To analyze and compare the phenotypic and genetic variation of wild subpopulations of Eugenia dysenterica DC., a fruity tree, 25 subpopulations were sampled in five states of the Brazilian Cerrado. Within each subpopulation, six trees were sampled and twenty fruits (maternal siblings) collected. Five fruits of each family were evaluated for morphometric variables of fruits and seeds. Twenty seeds of each family were randomly sown in each one of four blocks, five seeds per plot, established in a common garden experiment. Hierarchical model analysis of variance and variance components estimation were performed for fruit, seeds and early development traits and QST were estimated for early development traits. Four individuals per family were genotyped using nine microsatellite loci. Significant phenotypic and genotypic variations were observed both between subpopulations and between families within subpopulations. The highest proportion of the variance was found among families. Heritability estimates were 0.23 and 0.27 for growth rate and number of leaves and greater than 0.34 for other traits, indicating high potential for selective gain. Rapid early development is important for seedlings commercial production. Above ground biomass represented 15% of total biomass. Subpopulations are significantly structured for root length, height and diameter growth rates (QST 0.34, 0.23 and 0.20), but weak structure was establish for biomass and seedling emergence (QST <0.04). It has high genetic diversity, with average expected heterozigosity of 0.642. The mating system was mainly outcrossing (ta = 0.73), with high genetic differentiation between subpopulations (θP = 0.198), similar to previous studies. QST - FST contrasts were not significant for sixteen out of eighteen traits, suggesting genetic drift as the main source of phenotypic differentiation. Even though seedling emergence average time and root system fresh mass genetic similarity is granted to uniform selection. Quantitative and genetic distances clustered two distinct groups spatially structured, with respect to the Corumbá and São Bartolomeu river valley, in addition to the Chapada dos Veadeiros and Vão do Paranã region. Subpopulation 21 (Cocalinho-MT) quantitatively diverged from the two clusters. An in vivo collection of E. dysenterica was established for ex situ conservation. Genetic characterization and sampling extent suggest that the collection portrays well the cagaiteira’s wild population for selection purposes.
publishDate 2014
dc.date.issued.fl_str_mv 2014-10-16
dc.date.accessioned.fl_str_mv 2019-07-16T12:35:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv NOVAES, Carolina Ribeiro Diniz Boaventura. Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC. 2014. 223 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/9835
identifier_str_mv NOVAES, Carolina Ribeiro Diniz Boaventura. Variabilidade e divergência genética de caracteres quantitativos e marcadores neutros em populações de Eugenia dysenterica DC. 2014. 223 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014.
url http://repositorio.bc.ufg.br/tede/handle/tede/9835
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv -6265679607231828330
dc.relation.confidence.fl_str_mv 600
600
600
600
dc.relation.department.fl_str_mv -6046953723502374070
dc.relation.cnpq.fl_str_mv -7158667589435676909
dc.relation.sponsorship.fl_str_mv 2075167498588264571
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Genética e Melhoramento de Plantas (EA)
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Escola de Agronomia - EA (RG)
publisher.none.fl_str_mv Universidade Federal de Goiás
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