Testing the accuracy of imaging software for measuring tree root volumes

Detalhes bibliográficos
Autor(a) principal: Lopes, Angélica Bannwart
Data de Publicação: 2016
Outros Autores: Koeser, Andrew K., Roberts, John W., Miesbauer, Jason W., Kling, Gary J., Lo, Marvin, Morgenroth, Justin
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: https://doi.org/10.1016/j.ufug.2016.05.009
http://www.locus.ufv.br/handle/123456789/21504
Resumo: Manually measuring tree root characteristics can be inefficient and limiting. To test the application of a new digital technology in tree root architecture research, root systems from 29 green ash (Fraxinus pennsylvanica ’Patmore’) trees were unearthed, cleaned, and photographed to create 3D models using structure from motion (SfM) photogrammetry. Three root segments from each root system were selected, marked, and removed after being photographed. The volumes of these segments (derived from the 3D models) were compared against volumes measured using water displacement. In addition to the root segments, model and water displacement volumes were compared for three complete root systems. Regression analysis showed a strong linear relation between the two volumes measurements (adjusted R 2 = 0.97 for the root segment data). The RMSE for the root segment volume estimates was 40.37 cm^ 3 (12.3%), with a bias of 17.2 cm^ 3 (5.3%). This error rate was similar to previous published work and suggests the technology used may allow researchers to improve efficiency in data capture, add new measurements (i.e., surface area) to their modeling efforts, and digitally preserve tree root systems for future study.
id UFV_2cfd5c9afbaf30a72ffe4cc9b210c3a8
oai_identifier_str oai:locus.ufv.br:123456789/21504
network_acronym_str UFV
network_name_str LOCUS Repositório Institucional da UFV
repository_id_str 2145
spelling Lopes, Angélica BannwartKoeser, Andrew K.Roberts, John W.Miesbauer, Jason W.Kling, Gary J.Lo, MarvinMorgenroth, Justin2018-08-29T14:03:16Z2018-08-29T14:03:16Z2016-08-0116188667https://doi.org/10.1016/j.ufug.2016.05.009http://www.locus.ufv.br/handle/123456789/21504Manually measuring tree root characteristics can be inefficient and limiting. To test the application of a new digital technology in tree root architecture research, root systems from 29 green ash (Fraxinus pennsylvanica ’Patmore’) trees were unearthed, cleaned, and photographed to create 3D models using structure from motion (SfM) photogrammetry. Three root segments from each root system were selected, marked, and removed after being photographed. The volumes of these segments (derived from the 3D models) were compared against volumes measured using water displacement. In addition to the root segments, model and water displacement volumes were compared for three complete root systems. Regression analysis showed a strong linear relation between the two volumes measurements (adjusted R 2 = 0.97 for the root segment data). The RMSE for the root segment volume estimates was 40.37 cm^ 3 (12.3%), with a bias of 17.2 cm^ 3 (5.3%). This error rate was similar to previous published work and suggests the technology used may allow researchers to improve efficiency in data capture, add new measurements (i.e., surface area) to their modeling efforts, and digitally preserve tree root systems for future study.engUrban Forestry & Urban Greeningv. 18, p. 95- 99, ago. 2016Elsevier GmbH.info:eu-repo/semantics/openAccess3D modelBiomechanicsPhotogrammetryPoint cloudRoot architectureRoot morphologyRoot strengthRoot surface areaRoot volumeWater displacementWhole tree stabilityTesting the accuracy of imaging software for measuring tree root volumesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf874107https://locus.ufv.br//bitstream/123456789/21504/1/artigo.pdf3d5bfda7227dd4694f78e65b2868b518MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/21504/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52THUMBNAILartigo.pdf.jpgartigo.pdf.jpgIM Thumbnailimage/jpeg4633https://locus.ufv.br//bitstream/123456789/21504/3/artigo.pdf.jpge9035cd20d5ada9aa8aeec4eed125e95MD53123456789/215042018-08-29 23:00:49.432oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452018-08-30T02:00:49LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv Testing the accuracy of imaging software for measuring tree root volumes
title Testing the accuracy of imaging software for measuring tree root volumes
spellingShingle Testing the accuracy of imaging software for measuring tree root volumes
Lopes, Angélica Bannwart
3D model
Biomechanics
Photogrammetry
Point cloud
Root architecture
Root morphology
Root strength
Root surface area
Root volume
Water displacement
Whole tree stability
title_short Testing the accuracy of imaging software for measuring tree root volumes
title_full Testing the accuracy of imaging software for measuring tree root volumes
title_fullStr Testing the accuracy of imaging software for measuring tree root volumes
title_full_unstemmed Testing the accuracy of imaging software for measuring tree root volumes
title_sort Testing the accuracy of imaging software for measuring tree root volumes
author Lopes, Angélica Bannwart
author_facet Lopes, Angélica Bannwart
Koeser, Andrew K.
Roberts, John W.
Miesbauer, Jason W.
Kling, Gary J.
Lo, Marvin
Morgenroth, Justin
author_role author
author2 Koeser, Andrew K.
Roberts, John W.
Miesbauer, Jason W.
Kling, Gary J.
Lo, Marvin
Morgenroth, Justin
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Lopes, Angélica Bannwart
Koeser, Andrew K.
Roberts, John W.
Miesbauer, Jason W.
Kling, Gary J.
Lo, Marvin
Morgenroth, Justin
dc.subject.pt-BR.fl_str_mv 3D model
Biomechanics
Photogrammetry
Point cloud
Root architecture
Root morphology
Root strength
Root surface area
Root volume
Water displacement
Whole tree stability
topic 3D model
Biomechanics
Photogrammetry
Point cloud
Root architecture
Root morphology
Root strength
Root surface area
Root volume
Water displacement
Whole tree stability
description Manually measuring tree root characteristics can be inefficient and limiting. To test the application of a new digital technology in tree root architecture research, root systems from 29 green ash (Fraxinus pennsylvanica ’Patmore’) trees were unearthed, cleaned, and photographed to create 3D models using structure from motion (SfM) photogrammetry. Three root segments from each root system were selected, marked, and removed after being photographed. The volumes of these segments (derived from the 3D models) were compared against volumes measured using water displacement. In addition to the root segments, model and water displacement volumes were compared for three complete root systems. Regression analysis showed a strong linear relation between the two volumes measurements (adjusted R 2 = 0.97 for the root segment data). The RMSE for the root segment volume estimates was 40.37 cm^ 3 (12.3%), with a bias of 17.2 cm^ 3 (5.3%). This error rate was similar to previous published work and suggests the technology used may allow researchers to improve efficiency in data capture, add new measurements (i.e., surface area) to their modeling efforts, and digitally preserve tree root systems for future study.
publishDate 2016
dc.date.issued.fl_str_mv 2016-08-01
dc.date.accessioned.fl_str_mv 2018-08-29T14:03:16Z
dc.date.available.fl_str_mv 2018-08-29T14:03:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.1016/j.ufug.2016.05.009
http://www.locus.ufv.br/handle/123456789/21504
dc.identifier.issn.none.fl_str_mv 16188667
identifier_str_mv 16188667
url https://doi.org/10.1016/j.ufug.2016.05.009
http://www.locus.ufv.br/handle/123456789/21504
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartofseries.pt-BR.fl_str_mv v. 18, p. 95- 99, ago. 2016
dc.rights.driver.fl_str_mv Elsevier GmbH.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Elsevier GmbH.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Urban Forestry & Urban Greening
publisher.none.fl_str_mv Urban Forestry & Urban Greening
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
instname:Universidade Federal de Viçosa (UFV)
instacron:UFV
instname_str Universidade Federal de Viçosa (UFV)
instacron_str UFV
institution UFV
reponame_str LOCUS Repositório Institucional da UFV
collection LOCUS Repositório Institucional da UFV
bitstream.url.fl_str_mv https://locus.ufv.br//bitstream/123456789/21504/1/artigo.pdf
https://locus.ufv.br//bitstream/123456789/21504/2/license.txt
https://locus.ufv.br//bitstream/123456789/21504/3/artigo.pdf.jpg
bitstream.checksum.fl_str_mv 3d5bfda7227dd4694f78e65b2868b518
8a4605be74aa9ea9d79846c1fba20a33
e9035cd20d5ada9aa8aeec4eed125e95
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)
repository.mail.fl_str_mv fabiojreis@ufv.br
_version_ 1801212931494379520