The population structure of Hemileia vastatrix in Brazil inferred from AFLP
Autor(a) principal: | |
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Data de Publicação: | 2013 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | https://doi.org/10.1007/s13313-013-0213-3 http://www.locus.ufv.br/handle/123456789/23100 |
Resumo: | Efforts to obtain durable resistant cultivars to coffee leaf rust have a long history of disappointment because of the lack of information on the Hemileia vastatrix evolutionary potential. In this study, the AFLP marker was used to analyze the genetic structure of a field population of H. vastatrix from different coffee genotypes cultivated in a wide geographic region of Brazil’s main production areas. A total of 91 isolates were sampled from genotypes of Coffea arabica, C. canephora and Híbrido de Timor/Icatu derivatives. Each isolate exhibited unique multilocus AFLP genotypes with no identical isolates obtained from the same geographical and host origins. This finding was corroborated by a small correlation between genetic similarity and geographic distance (R xy = 0.31, P = 0.23). The analyses showed a low genetic differentiation (G ST = 0.026) between the populations defined by a host and AMOVA analysis, most of the genetic variance (99.56 %) was attributed to differences within populations. In addition, based on the index of association (IA), the random mating possibility was not rejected (IA = 0.225, P = 0.123) for the population of H. vastatrix derived from C. canephora. This result suggested that H. vastatrix in Brazil behaves as a large undifferentiated population with a high level of genotypic diversity that is unstructured with regard to its geographic and host origins. |
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Maia, T. A.Caixeta, E. T.Mizubuti, E. S. G.Zambolim, L.Maciel-Zambolim, E.2019-01-18T13:34:28Z2019-01-18T13:34:28Z2013-091448-6032https://doi.org/10.1007/s13313-013-0213-3http://www.locus.ufv.br/handle/123456789/23100Efforts to obtain durable resistant cultivars to coffee leaf rust have a long history of disappointment because of the lack of information on the Hemileia vastatrix evolutionary potential. In this study, the AFLP marker was used to analyze the genetic structure of a field population of H. vastatrix from different coffee genotypes cultivated in a wide geographic region of Brazil’s main production areas. A total of 91 isolates were sampled from genotypes of Coffea arabica, C. canephora and Híbrido de Timor/Icatu derivatives. Each isolate exhibited unique multilocus AFLP genotypes with no identical isolates obtained from the same geographical and host origins. This finding was corroborated by a small correlation between genetic similarity and geographic distance (R xy = 0.31, P = 0.23). The analyses showed a low genetic differentiation (G ST = 0.026) between the populations defined by a host and AMOVA analysis, most of the genetic variance (99.56 %) was attributed to differences within populations. In addition, based on the index of association (IA), the random mating possibility was not rejected (IA = 0.225, P = 0.123) for the population of H. vastatrix derived from C. canephora. This result suggested that H. vastatrix in Brazil behaves as a large undifferentiated population with a high level of genotypic diversity that is unstructured with regard to its geographic and host origins.engAustralasian Plant PathologyVolume 42, Issue 5, Pages 533– 542, September 2013Australasian Plant Pathology Society Inc. 2013info:eu-repo/semantics/openAccessCoffee leaf rustDurable resistancePopulation geneticsCoffea arabicaCoffea canephoraThe population structure of Hemileia vastatrix in Brazil inferred from AFLPinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdfTexto completoapplication/pdf395990https://locus.ufv.br//bitstream/123456789/23100/1/artigo.pdfed3229a00e0eb183183a76a760b08968MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/23100/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/231002019-01-18 10:38:16.05oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-01-18T13:38:16LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.en.fl_str_mv |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
title |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
spellingShingle |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP Maia, T. A. Coffee leaf rust Durable resistance Population genetics Coffea arabica Coffea canephora |
title_short |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
title_full |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
title_fullStr |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
title_full_unstemmed |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
title_sort |
The population structure of Hemileia vastatrix in Brazil inferred from AFLP |
author |
Maia, T. A. |
author_facet |
Maia, T. A. Caixeta, E. T. Mizubuti, E. S. G. Zambolim, L. Maciel-Zambolim, E. |
author_role |
author |
author2 |
Caixeta, E. T. Mizubuti, E. S. G. Zambolim, L. Maciel-Zambolim, E. |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Maia, T. A. Caixeta, E. T. Mizubuti, E. S. G. Zambolim, L. Maciel-Zambolim, E. |
dc.subject.pt-BR.fl_str_mv |
Coffee leaf rust Durable resistance Population genetics Coffea arabica Coffea canephora |
topic |
Coffee leaf rust Durable resistance Population genetics Coffea arabica Coffea canephora |
description |
Efforts to obtain durable resistant cultivars to coffee leaf rust have a long history of disappointment because of the lack of information on the Hemileia vastatrix evolutionary potential. In this study, the AFLP marker was used to analyze the genetic structure of a field population of H. vastatrix from different coffee genotypes cultivated in a wide geographic region of Brazil’s main production areas. A total of 91 isolates were sampled from genotypes of Coffea arabica, C. canephora and Híbrido de Timor/Icatu derivatives. Each isolate exhibited unique multilocus AFLP genotypes with no identical isolates obtained from the same geographical and host origins. This finding was corroborated by a small correlation between genetic similarity and geographic distance (R xy = 0.31, P = 0.23). The analyses showed a low genetic differentiation (G ST = 0.026) between the populations defined by a host and AMOVA analysis, most of the genetic variance (99.56 %) was attributed to differences within populations. In addition, based on the index of association (IA), the random mating possibility was not rejected (IA = 0.225, P = 0.123) for the population of H. vastatrix derived from C. canephora. This result suggested that H. vastatrix in Brazil behaves as a large undifferentiated population with a high level of genotypic diversity that is unstructured with regard to its geographic and host origins. |
publishDate |
2013 |
dc.date.issued.fl_str_mv |
2013-09 |
dc.date.accessioned.fl_str_mv |
2019-01-18T13:34:28Z |
dc.date.available.fl_str_mv |
2019-01-18T13:34:28Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
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article |
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publishedVersion |
dc.identifier.uri.fl_str_mv |
https://doi.org/10.1007/s13313-013-0213-3 http://www.locus.ufv.br/handle/123456789/23100 |
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1448-6032 |
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1448-6032 |
url |
https://doi.org/10.1007/s13313-013-0213-3 http://www.locus.ufv.br/handle/123456789/23100 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofseries.pt-BR.fl_str_mv |
Volume 42, Issue 5, Pages 533– 542, September 2013 |
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Australasian Plant Pathology Society Inc. 2013 info:eu-repo/semantics/openAccess |
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Australasian Plant Pathology Society Inc. 2013 |
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openAccess |
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Australasian Plant Pathology |
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Australasian Plant Pathology |
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