Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.actatropica.2016.09.004 http://hdl.handle.net/11449/159229 |
Resumo: | Dengue viruses are the most common arbovirus infection worldwide and are caused by four distinct serotypes of the dengue virus (DENV). In the present study, we assessed DENV transmission in Sao Jose do Rio Preto (SJRP) from 2010 to 2014. We analyzed blood samples from febrile patients who were attended at health care centers in SJRP. DENV detection was performed using multiplex RT-PCR, using flavivirus generic primers, based on the genes of the non-structural protein (NS5), followed by nestedPCR assay with species-specific primers. We analyzed 1549 samples, of which 1389 were positive for NS1 by rapid test. One thousand and eight-seven samples (78%) were confirmed as positive by multiplex RTPCR: DENV-4, 48.5% (528/1087); DENV-1, 41.5% (449/1087); DENV-2, 9.5% (104/1087); and co-infection (5 DENV-1/DENV-4, 1 DENV-1/DENV-2), 0.5% (6/1087). Phylogenetic analysis of the DENV-4 grouped the isolates identified in this study with the American genotype and the showed a relationship between isolates from SJRP and isolates from the northern region of South America. Taken together, our data shows the detection and emergence of new dengue genotype in a new region and reiterate the importance of surveillance programs to detect and trace the evolution of DENV. (C) 2016 Elsevier B.V. All rights reserved. |
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Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, BrazilDengue virusTransmissionPhylogenetic analysisSurveillance programsDengue viruses are the most common arbovirus infection worldwide and are caused by four distinct serotypes of the dengue virus (DENV). In the present study, we assessed DENV transmission in Sao Jose do Rio Preto (SJRP) from 2010 to 2014. We analyzed blood samples from febrile patients who were attended at health care centers in SJRP. DENV detection was performed using multiplex RT-PCR, using flavivirus generic primers, based on the genes of the non-structural protein (NS5), followed by nestedPCR assay with species-specific primers. We analyzed 1549 samples, of which 1389 were positive for NS1 by rapid test. One thousand and eight-seven samples (78%) were confirmed as positive by multiplex RTPCR: DENV-4, 48.5% (528/1087); DENV-1, 41.5% (449/1087); DENV-2, 9.5% (104/1087); and co-infection (5 DENV-1/DENV-4, 1 DENV-1/DENV-2), 0.5% (6/1087). Phylogenetic analysis of the DENV-4 grouped the isolates identified in this study with the American genotype and the showed a relationship between isolates from SJRP and isolates from the northern region of South America. Taken together, our data shows the detection and emergence of new dengue genotype in a new region and reiterate the importance of surveillance programs to detect and trace the evolution of DENV. (C) 2016 Elsevier B.V. All rights reserved.PronexINCT-DengueFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fac Med Sao Jose do Rio Preto FAMERP, Sao Jose Do Rio Preto, SP, BrazilUniv Estadual Paulista, Inst Biociencias Botucatu, Lab Virol, Botucatu, SP, BrazilDept Vigilancia Saude, Prefeitura Sao Jose do Rio Preto, Sao Jose Do Rio Preto, SP, BrazilUniv Fed Minas Gerais, Dept Microbiol, Belo Horizonte, MG, BrazilUniv Fed Mato Grosso, Inst Ciencias Saude, Sinop, MT, BrazilUniv Texas Med Branch, Ctr Biodefense & Emerging Infect Dis, Ctr Trop Dis, Inst Human Infect & Immun, Galveston, TX 77555 USAUniv Texas Med Branch, Dept Pathol, Galveston, TX 77555 USAUniv Estadual Paulista, Inst Biociencias Botucatu, Lab Virol, Botucatu, SP, BrazilElsevier B.V.Universidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Dept Vigilancia SaudeUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Mato Grosso do Sul (UFMS)Univ Texas Med BranchColombo, Tatiana EliasVedovello, DanilaPacca-Mazaro, Carolina ColombelliMondini, AdrianoAraujo, Joao Pessoa [UNESP]Cabrera, ElianaLopes, Jose CarlosPenha dos Santos, Izalco NurembergNegri Reis, Andreia FrancesliCosta, Fabiana RodriguesArao Antonio Cruz, Lilian ElisaFerreira, JurandirOliveira Rocha, Eliseu Soares deKroon, Erna GeessienMorais Bronzoni, Roberta Vieira deVasilakis, NikosNogueira, Mauricio Lacerda2018-11-26T15:37:31Z2018-11-26T15:37:31Z2016-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article84-89application/pdfhttp://dx.doi.org/10.1016/j.actatropica.2016.09.004Acta Tropica. Amsterdam: Elsevier Science Bv, v. 164, p. 84-89, 2016.0001-706Xhttp://hdl.handle.net/11449/15922910.1016/j.actatropica.2016.09.004WOS:000389087700013WOS000389087700013.pdf58211426247203980000-0002-5557-9721Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengActa Tropicainfo:eu-repo/semantics/openAccess2023-12-05T06:22:44Zoai:repositorio.unesp.br:11449/159229Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:35:10.191019Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
title |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
spellingShingle |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil Colombo, Tatiana Elias Dengue virus Transmission Phylogenetic analysis Surveillance programs |
title_short |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
title_full |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
title_fullStr |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
title_full_unstemmed |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
title_sort |
Dengue virus surveillance: Detection of DENV-4 in the city of Sao Jose do Rio Preto, SP, Brazil |
author |
Colombo, Tatiana Elias |
author_facet |
Colombo, Tatiana Elias Vedovello, Danila Pacca-Mazaro, Carolina Colombelli Mondini, Adriano Araujo, Joao Pessoa [UNESP] Cabrera, Eliana Lopes, Jose Carlos Penha dos Santos, Izalco Nuremberg Negri Reis, Andreia Francesli Costa, Fabiana Rodrigues Arao Antonio Cruz, Lilian Elisa Ferreira, Jurandir Oliveira Rocha, Eliseu Soares de Kroon, Erna Geessien Morais Bronzoni, Roberta Vieira de Vasilakis, Nikos Nogueira, Mauricio Lacerda |
author_role |
author |
author2 |
Vedovello, Danila Pacca-Mazaro, Carolina Colombelli Mondini, Adriano Araujo, Joao Pessoa [UNESP] Cabrera, Eliana Lopes, Jose Carlos Penha dos Santos, Izalco Nuremberg Negri Reis, Andreia Francesli Costa, Fabiana Rodrigues Arao Antonio Cruz, Lilian Elisa Ferreira, Jurandir Oliveira Rocha, Eliseu Soares de Kroon, Erna Geessien Morais Bronzoni, Roberta Vieira de Vasilakis, Nikos Nogueira, Mauricio Lacerda |
author2_role |
author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Universidade Estadual Paulista (Unesp) Dept Vigilancia Saude Universidade Federal de Minas Gerais (UFMG) Universidade Federal de Mato Grosso do Sul (UFMS) Univ Texas Med Branch |
dc.contributor.author.fl_str_mv |
Colombo, Tatiana Elias Vedovello, Danila Pacca-Mazaro, Carolina Colombelli Mondini, Adriano Araujo, Joao Pessoa [UNESP] Cabrera, Eliana Lopes, Jose Carlos Penha dos Santos, Izalco Nuremberg Negri Reis, Andreia Francesli Costa, Fabiana Rodrigues Arao Antonio Cruz, Lilian Elisa Ferreira, Jurandir Oliveira Rocha, Eliseu Soares de Kroon, Erna Geessien Morais Bronzoni, Roberta Vieira de Vasilakis, Nikos Nogueira, Mauricio Lacerda |
dc.subject.por.fl_str_mv |
Dengue virus Transmission Phylogenetic analysis Surveillance programs |
topic |
Dengue virus Transmission Phylogenetic analysis Surveillance programs |
description |
Dengue viruses are the most common arbovirus infection worldwide and are caused by four distinct serotypes of the dengue virus (DENV). In the present study, we assessed DENV transmission in Sao Jose do Rio Preto (SJRP) from 2010 to 2014. We analyzed blood samples from febrile patients who were attended at health care centers in SJRP. DENV detection was performed using multiplex RT-PCR, using flavivirus generic primers, based on the genes of the non-structural protein (NS5), followed by nestedPCR assay with species-specific primers. We analyzed 1549 samples, of which 1389 were positive for NS1 by rapid test. One thousand and eight-seven samples (78%) were confirmed as positive by multiplex RTPCR: DENV-4, 48.5% (528/1087); DENV-1, 41.5% (449/1087); DENV-2, 9.5% (104/1087); and co-infection (5 DENV-1/DENV-4, 1 DENV-1/DENV-2), 0.5% (6/1087). Phylogenetic analysis of the DENV-4 grouped the isolates identified in this study with the American genotype and the showed a relationship between isolates from SJRP and isolates from the northern region of South America. Taken together, our data shows the detection and emergence of new dengue genotype in a new region and reiterate the importance of surveillance programs to detect and trace the evolution of DENV. (C) 2016 Elsevier B.V. All rights reserved. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-12-01 2018-11-26T15:37:31Z 2018-11-26T15:37:31Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.actatropica.2016.09.004 Acta Tropica. Amsterdam: Elsevier Science Bv, v. 164, p. 84-89, 2016. 0001-706X http://hdl.handle.net/11449/159229 10.1016/j.actatropica.2016.09.004 WOS:000389087700013 WOS000389087700013.pdf 5821142624720398 0000-0002-5557-9721 |
url |
http://dx.doi.org/10.1016/j.actatropica.2016.09.004 http://hdl.handle.net/11449/159229 |
identifier_str_mv |
Acta Tropica. Amsterdam: Elsevier Science Bv, v. 164, p. 84-89, 2016. 0001-706X 10.1016/j.actatropica.2016.09.004 WOS:000389087700013 WOS000389087700013.pdf 5821142624720398 0000-0002-5557-9721 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Acta Tropica |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
84-89 application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier B.V. |
publisher.none.fl_str_mv |
Elsevier B.V. |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129090042986496 |