Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis

Detalhes bibliográficos
Autor(a) principal: Araujo, Evandro Ares de
Data de Publicação: 2019
Outros Autores: Oliveira Neto, Mario de [UNESP], Polikarpov, Igor
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s00253-018-9508-1
http://hdl.handle.net/11449/185447
Resumo: Lignocellulose feedstock constitutes the most abundant carbon source in the biosphere; however, its recalcitrance remains a challenge for microbial conversion into biofuel and bioproducts. Bacillus licheniformis is a microbial mesophilic bacterium capable of secreting a large number of glycoside hydrolase (GH) enzymes, including a glycoside hydrolase from GH family 9 (BlCel9). Here, we conducted biochemical and biophysical studies of recombinant BlCel9, and its low-resolution molecular shape was retrieved from small angle X-ray scattering (SAXS) data. BlCel9 is an endoglucanase exhibiting maximum catalytic efficiency at pH7.0 and 60 degrees C. Furthermore, it retains 80% of catalytic activity within a broad range of pH values (5.5-8.5) and temperatures (up to 50 degrees C) for extended periods of time (over 48h). It exhibits the highest hydrolytic activity against phosphoric acid swollen cellulose (PASC), followed by bacterial cellulose (BC), filter paper (FP), and to a lesser extent carboxymethylcellulose (CMC). The HPAEC-PAD analysis of the hydrolytic products demonstrated that the end product of the enzymatic hydrolysis is primarily cellobiose, and also small amounts of glucose, cellotriose, and cellotetraose are produced. SAXS data analysis revealed that the enzyme adopts a monomeric state in solution and has a molecular mass of 65.8kDa as estimated from SAXS data. The BlCel9 has an elongated shape composed of an N-terminal family 3 carbohydrate-binding module (CBM3c) and a C-terminal GH9 catalytic domain joined together by 20 amino acid residue long linker peptides. The domains are closely juxtaposed in an extended conformation and form a relatively rigid structure in solution, indicating that the interactions between the CBM3c and GH9 catalytic domains might play a key role in cooperative cellulose biomass recognition and hydrolysis.
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spelling Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformisGH9 familyFamily 3 carbohydrate-binding module (CBM3c)EndoglucanaseSmall angle X-ray scattering (SAXS)Lignocellulose feedstock constitutes the most abundant carbon source in the biosphere; however, its recalcitrance remains a challenge for microbial conversion into biofuel and bioproducts. Bacillus licheniformis is a microbial mesophilic bacterium capable of secreting a large number of glycoside hydrolase (GH) enzymes, including a glycoside hydrolase from GH family 9 (BlCel9). Here, we conducted biochemical and biophysical studies of recombinant BlCel9, and its low-resolution molecular shape was retrieved from small angle X-ray scattering (SAXS) data. BlCel9 is an endoglucanase exhibiting maximum catalytic efficiency at pH7.0 and 60 degrees C. Furthermore, it retains 80% of catalytic activity within a broad range of pH values (5.5-8.5) and temperatures (up to 50 degrees C) for extended periods of time (over 48h). It exhibits the highest hydrolytic activity against phosphoric acid swollen cellulose (PASC), followed by bacterial cellulose (BC), filter paper (FP), and to a lesser extent carboxymethylcellulose (CMC). The HPAEC-PAD analysis of the hydrolytic products demonstrated that the end product of the enzymatic hydrolysis is primarily cellobiose, and also small amounts of glucose, cellotriose, and cellotetraose are produced. SAXS data analysis revealed that the enzyme adopts a monomeric state in solution and has a molecular mass of 65.8kDa as estimated from SAXS data. The BlCel9 has an elongated shape composed of an N-terminal family 3 carbohydrate-binding module (CBM3c) and a C-terminal GH9 catalytic domain joined together by 20 amino acid residue long linker peptides. The domains are closely juxtaposed in an extended conformation and form a relatively rigid structure in solution, indicating that the interactions between the CBM3c and GH9 catalytic domains might play a key role in cooperative cellulose biomass recognition and hydrolysis.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Univ Sao Paulo, Inst Fis Sao Carlos, Ave Trabalhador Saocarlense 400, BR-13560970 Sao Carlos, SP, BrazilUniv Estadual Paulista, Dept Fis & Biofis, R Prof Dr Antonio CelsoWagner Zanin 689, BR-18618970 Botucatu, SP, BrazilUniv Estadual Paulista, Dept Fis & Biofis, R Prof Dr Antonio CelsoWagner Zanin 689, BR-18618970 Botucatu, SP, BrazilFAPESP: 2015/13684-0CNPq: 405191/2015-4CNPq: 140667/2015-6CNPq: 158752/2015-5CNPq: 303988/2016-9CNPq: 440977/2016-9SpringerUniversidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Araujo, Evandro Ares deOliveira Neto, Mario de [UNESP]Polikarpov, Igor2019-10-04T12:35:35Z2019-10-04T12:35:35Z2019-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1275-1287http://dx.doi.org/10.1007/s00253-018-9508-1Applied Microbiology And Biotechnology. New York: Springer, v. 103, n. 3, p. 1275-1287, 2019.0175-7598http://hdl.handle.net/11449/18544710.1007/s00253-018-9508-1WOS:0004591050000188213371495151651Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengApplied Microbiology And Biotechnologyinfo:eu-repo/semantics/openAccess2021-10-23T02:54:03Zoai:repositorio.unesp.br:11449/185447Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:54:43.310045Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
title Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
spellingShingle Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
Araujo, Evandro Ares de
GH9 family
Family 3 carbohydrate-binding module (CBM3c)
Endoglucanase
Small angle X-ray scattering (SAXS)
title_short Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
title_full Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
title_fullStr Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
title_full_unstemmed Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
title_sort Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis
author Araujo, Evandro Ares de
author_facet Araujo, Evandro Ares de
Oliveira Neto, Mario de [UNESP]
Polikarpov, Igor
author_role author
author2 Oliveira Neto, Mario de [UNESP]
Polikarpov, Igor
author2_role author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Araujo, Evandro Ares de
Oliveira Neto, Mario de [UNESP]
Polikarpov, Igor
dc.subject.por.fl_str_mv GH9 family
Family 3 carbohydrate-binding module (CBM3c)
Endoglucanase
Small angle X-ray scattering (SAXS)
topic GH9 family
Family 3 carbohydrate-binding module (CBM3c)
Endoglucanase
Small angle X-ray scattering (SAXS)
description Lignocellulose feedstock constitutes the most abundant carbon source in the biosphere; however, its recalcitrance remains a challenge for microbial conversion into biofuel and bioproducts. Bacillus licheniformis is a microbial mesophilic bacterium capable of secreting a large number of glycoside hydrolase (GH) enzymes, including a glycoside hydrolase from GH family 9 (BlCel9). Here, we conducted biochemical and biophysical studies of recombinant BlCel9, and its low-resolution molecular shape was retrieved from small angle X-ray scattering (SAXS) data. BlCel9 is an endoglucanase exhibiting maximum catalytic efficiency at pH7.0 and 60 degrees C. Furthermore, it retains 80% of catalytic activity within a broad range of pH values (5.5-8.5) and temperatures (up to 50 degrees C) for extended periods of time (over 48h). It exhibits the highest hydrolytic activity against phosphoric acid swollen cellulose (PASC), followed by bacterial cellulose (BC), filter paper (FP), and to a lesser extent carboxymethylcellulose (CMC). The HPAEC-PAD analysis of the hydrolytic products demonstrated that the end product of the enzymatic hydrolysis is primarily cellobiose, and also small amounts of glucose, cellotriose, and cellotetraose are produced. SAXS data analysis revealed that the enzyme adopts a monomeric state in solution and has a molecular mass of 65.8kDa as estimated from SAXS data. The BlCel9 has an elongated shape composed of an N-terminal family 3 carbohydrate-binding module (CBM3c) and a C-terminal GH9 catalytic domain joined together by 20 amino acid residue long linker peptides. The domains are closely juxtaposed in an extended conformation and form a relatively rigid structure in solution, indicating that the interactions between the CBM3c and GH9 catalytic domains might play a key role in cooperative cellulose biomass recognition and hydrolysis.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-04T12:35:35Z
2019-10-04T12:35:35Z
2019-02-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00253-018-9508-1
Applied Microbiology And Biotechnology. New York: Springer, v. 103, n. 3, p. 1275-1287, 2019.
0175-7598
http://hdl.handle.net/11449/185447
10.1007/s00253-018-9508-1
WOS:000459105000018
8213371495151651
url http://dx.doi.org/10.1007/s00253-018-9508-1
http://hdl.handle.net/11449/185447
identifier_str_mv Applied Microbiology And Biotechnology. New York: Springer, v. 103, n. 3, p. 1275-1287, 2019.
0175-7598
10.1007/s00253-018-9508-1
WOS:000459105000018
8213371495151651
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Applied Microbiology And Biotechnology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1275-1287
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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