Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1159/000441465 http://hdl.handle.net/11449/172425 |
Resumo: | Transposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes. |
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Repositório Institucional da UNESP |
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Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)HeterochromatinMolecular markersRetrotransposonsRex1Rex3Sex chromosomesTransposable elementsTransposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes.Laboratório de Biologia e Genética de Peixes Instituto de Biociências de Botucatu Universidade Estadual Paulista (UNESP)Laboratório de Genética Animal Instituto de Biociências Departamento de Biologia e Zoologia Universidade Federal de Mato Grosso (UFMT)Laboratório de Biologia e Genética de Peixes Instituto de Biociências de Botucatu Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal de Mato Grosso (UFMT)De Sene, Viviani F. [UNESP]Pansonato-Alves, José C. [UNESP]Ferreira, Daniela C.Utsunomia, Ricardo [UNESP]Oliveira, Claudio [UNESP]Foresti, Fausto [UNESP]2018-12-11T17:00:14Z2018-12-11T17:00:14Z2015-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article319-324application/pdfhttp://dx.doi.org/10.1159/000441465Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015.1424-859X1424-8581http://hdl.handle.net/11449/17242510.1159/0004414652-s2.0-849543994672-s2.0-84954399467.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCytogenetic and Genome Research0,748info:eu-repo/semantics/openAccess2024-01-04T06:29:50Zoai:repositorio.unesp.br:11449/172425Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:08:35.592196Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
title |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
spellingShingle |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) De Sene, Viviani F. [UNESP] Heterochromatin Molecular markers Retrotransposons Rex1 Rex3 Sex chromosomes Transposable elements |
title_short |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
title_full |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
title_fullStr |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
title_full_unstemmed |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
title_sort |
Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae) |
author |
De Sene, Viviani F. [UNESP] |
author_facet |
De Sene, Viviani F. [UNESP] Pansonato-Alves, José C. [UNESP] Ferreira, Daniela C. Utsunomia, Ricardo [UNESP] Oliveira, Claudio [UNESP] Foresti, Fausto [UNESP] |
author_role |
author |
author2 |
Pansonato-Alves, José C. [UNESP] Ferreira, Daniela C. Utsunomia, Ricardo [UNESP] Oliveira, Claudio [UNESP] Foresti, Fausto [UNESP] |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade Federal de Mato Grosso (UFMT) |
dc.contributor.author.fl_str_mv |
De Sene, Viviani F. [UNESP] Pansonato-Alves, José C. [UNESP] Ferreira, Daniela C. Utsunomia, Ricardo [UNESP] Oliveira, Claudio [UNESP] Foresti, Fausto [UNESP] |
dc.subject.por.fl_str_mv |
Heterochromatin Molecular markers Retrotransposons Rex1 Rex3 Sex chromosomes Transposable elements |
topic |
Heterochromatin Molecular markers Retrotransposons Rex1 Rex3 Sex chromosomes Transposable elements |
description |
Transposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-12-01 2018-12-11T17:00:14Z 2018-12-11T17:00:14Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1159/000441465 Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015. 1424-859X 1424-8581 http://hdl.handle.net/11449/172425 10.1159/000441465 2-s2.0-84954399467 2-s2.0-84954399467.pdf |
url |
http://dx.doi.org/10.1159/000441465 http://hdl.handle.net/11449/172425 |
identifier_str_mv |
Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015. 1424-859X 1424-8581 10.1159/000441465 2-s2.0-84954399467 2-s2.0-84954399467.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Cytogenetic and Genome Research 0,748 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
319-324 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129396788166656 |