Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)

Detalhes bibliográficos
Autor(a) principal: De Sene, Viviani F. [UNESP]
Data de Publicação: 2015
Outros Autores: Pansonato-Alves, José C. [UNESP], Ferreira, Daniela C., Utsunomia, Ricardo [UNESP], Oliveira, Claudio [UNESP], Foresti, Fausto [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1159/000441465
http://hdl.handle.net/11449/172425
Resumo: Transposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes.
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spelling Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)HeterochromatinMolecular markersRetrotransposonsRex1Rex3Sex chromosomesTransposable elementsTransposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes.Laboratório de Biologia e Genética de Peixes Instituto de Biociências de Botucatu Universidade Estadual Paulista (UNESP)Laboratório de Genética Animal Instituto de Biociências Departamento de Biologia e Zoologia Universidade Federal de Mato Grosso (UFMT)Laboratório de Biologia e Genética de Peixes Instituto de Biociências de Botucatu Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal de Mato Grosso (UFMT)De Sene, Viviani F. [UNESP]Pansonato-Alves, José C. [UNESP]Ferreira, Daniela C.Utsunomia, Ricardo [UNESP]Oliveira, Claudio [UNESP]Foresti, Fausto [UNESP]2018-12-11T17:00:14Z2018-12-11T17:00:14Z2015-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article319-324application/pdfhttp://dx.doi.org/10.1159/000441465Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015.1424-859X1424-8581http://hdl.handle.net/11449/17242510.1159/0004414652-s2.0-849543994672-s2.0-84954399467.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCytogenetic and Genome Research0,748info:eu-repo/semantics/openAccess2024-01-04T06:29:50Zoai:repositorio.unesp.br:11449/172425Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:08:35.592196Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
title Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
spellingShingle Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
De Sene, Viviani F. [UNESP]
Heterochromatin
Molecular markers
Retrotransposons
Rex1
Rex3
Sex chromosomes
Transposable elements
title_short Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
title_full Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
title_fullStr Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
title_full_unstemmed Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
title_sort Mapping of the Retrotransposable Elements Rex1 and Rex3 in Chromosomes of Eigenmannia (Teleostei, Gymnotiformes, Sternopygidae)
author De Sene, Viviani F. [UNESP]
author_facet De Sene, Viviani F. [UNESP]
Pansonato-Alves, José C. [UNESP]
Ferreira, Daniela C.
Utsunomia, Ricardo [UNESP]
Oliveira, Claudio [UNESP]
Foresti, Fausto [UNESP]
author_role author
author2 Pansonato-Alves, José C. [UNESP]
Ferreira, Daniela C.
Utsunomia, Ricardo [UNESP]
Oliveira, Claudio [UNESP]
Foresti, Fausto [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal de Mato Grosso (UFMT)
dc.contributor.author.fl_str_mv De Sene, Viviani F. [UNESP]
Pansonato-Alves, José C. [UNESP]
Ferreira, Daniela C.
Utsunomia, Ricardo [UNESP]
Oliveira, Claudio [UNESP]
Foresti, Fausto [UNESP]
dc.subject.por.fl_str_mv Heterochromatin
Molecular markers
Retrotransposons
Rex1
Rex3
Sex chromosomes
Transposable elements
topic Heterochromatin
Molecular markers
Retrotransposons
Rex1
Rex3
Sex chromosomes
Transposable elements
description Transposable elements constitute a remarkable fraction of the eukaryote genome and show particular capacity to move and insert in specific regions of the genome. This study identified the retrotransposable elements Rex1 and Rex3 in the genomes of 6 cytotypes of Eigenmannia. The sequences were isolated by PCR, sequenced and physically mapped in the chromosomes of these cytotypes, aiming to investigate the organization and distribution of these elements in this fish group, mainly in the sex chromosomes. The FISH physical mapping revealed that both Rex1 and Rex3 elements are dispersed in small clusters throughout the chromosomes of all cytotypes analyzed. However, conspicuous blocks occur in several samples, including an accentuated accumulation of the Rex3 element in X1 and X2 chromosomes of Eigenmannia sp. 2 and in the X chromosome of E. virescens. The accumulations are coincident with heterochromatin-rich regions, suggesting that Rex3 played a role in the differentiation process of the sex chromosomes.
publishDate 2015
dc.date.none.fl_str_mv 2015-12-01
2018-12-11T17:00:14Z
2018-12-11T17:00:14Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1159/000441465
Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015.
1424-859X
1424-8581
http://hdl.handle.net/11449/172425
10.1159/000441465
2-s2.0-84954399467
2-s2.0-84954399467.pdf
url http://dx.doi.org/10.1159/000441465
http://hdl.handle.net/11449/172425
identifier_str_mv Cytogenetic and Genome Research, v. 146, n. 4, p. 319-324, 2015.
1424-859X
1424-8581
10.1159/000441465
2-s2.0-84954399467
2-s2.0-84954399467.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cytogenetic and Genome Research
0,748
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 319-324
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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