Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri

Detalhes bibliográficos
Autor(a) principal: Ferreira, Rafael Marini [UNESP]
Data de Publicação: 2014
Tipo de documento: Tese
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://hdl.handle.net/11449/121984
Resumo: Citrus canker (CC) is an important disease affecting many citrus species. It can result from infection by Xanthomonas citri subsp. citri (Xac) and can be transmitted by water, contact or propagation of infected leaves. Comparative studies have shown that one of the most intriguing features within the Xanthomonas genus is the extraordinary genome plasticity and highly mosaic architecture. This is largely the consequence of genomic rearrangements involving several genomic islands (GI), insertion sequences (IS), and few prophages insertion events. High quality IS annotation coupled with comparative genomics revealed a complete transposon of the Tn3 family in the Xanthomonas citri genome (ISXax2), with several T3SEs passenger genes, including a highly conserved lytic murein transglycosylase (mlt), a helper protein of the T3SS. Random transposon insertion was used to generate XacΔmltB and site directed mutagenesis was used to generate the XacΔmlt mutant. Using ISXax2 from Xac as an example we demonstrated that the plasmid copy of mltB (mlt) was indeed functional and required to generate symptoms in vivo. Transposition assays showed transposition rates for ISXax2 with a frequency of about 1.65 x 10-5. In this study we have used a mixture of bioinformatic and experimental approaches to address the role and behavior of such potentially transposable element. We showed that the entire structure was capable of transposition and that MICs (Mobile Insertion Cassettes) containing TAL effectors could also be mobilized. These results provide strong evidence that, in the case of Xac and closely related species, pathogenicity and virulence genes can be spread by a Tn3-like transposition mechanism, using conjugative plasmids as intercellular vectors. We propose that this process is a key agent to modulate the bacterial virulence and the host-specificity in this group of plant pathogens
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spelling Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citriCítricos - Doenças e pragasCancro citricoBacterias fitopatogenicasXanthomonasGenômicaProteínasGenetica vegetalGenomicsCitrus canker (CC) is an important disease affecting many citrus species. It can result from infection by Xanthomonas citri subsp. citri (Xac) and can be transmitted by water, contact or propagation of infected leaves. Comparative studies have shown that one of the most intriguing features within the Xanthomonas genus is the extraordinary genome plasticity and highly mosaic architecture. This is largely the consequence of genomic rearrangements involving several genomic islands (GI), insertion sequences (IS), and few prophages insertion events. High quality IS annotation coupled with comparative genomics revealed a complete transposon of the Tn3 family in the Xanthomonas citri genome (ISXax2), with several T3SEs passenger genes, including a highly conserved lytic murein transglycosylase (mlt), a helper protein of the T3SS. Random transposon insertion was used to generate XacΔmltB and site directed mutagenesis was used to generate the XacΔmlt mutant. Using ISXax2 from Xac as an example we demonstrated that the plasmid copy of mltB (mlt) was indeed functional and required to generate symptoms in vivo. Transposition assays showed transposition rates for ISXax2 with a frequency of about 1.65 x 10-5. In this study we have used a mixture of bioinformatic and experimental approaches to address the role and behavior of such potentially transposable element. We showed that the entire structure was capable of transposition and that MICs (Mobile Insertion Cassettes) containing TAL effectors could also be mobilized. These results provide strong evidence that, in the case of Xac and closely related species, pathogenicity and virulence genes can be spread by a Tn3-like transposition mechanism, using conjugative plasmids as intercellular vectors. We propose that this process is a key agent to modulate the bacterial virulence and the host-specificity in this group of plant pathogensO Cancro Cítrico é uma importante doença que afeta diversas espécies de citros. Tal doença resulta da infecção pela bactéria Xanthomonas citri subsp. citri (Xac), transmitida pela água, contato ou propagação de folhas infectadas. Estudos comparativos têm mostrado que uma das características mais intrigantes do gênero Xanthomonas é a extraordinária plasticidade do genoma e sua arquitetura altamente mosaica. Isso se deve principalmente a rearranjos genômicos envolvendo diversas ilhas genômicas (GI), sequências de Inserção (IS), e alguns eventos de inserção de profagos. A anotação de IS de alta qualidade em conjunto com a genômica comparativa revelaram um transposon completo da família TN3 no genoma de Xanthomonas citri (ISXax2), contendo diversos genes passageiros efetores do SSTT, incluindo a altamente conservada transglicosilase lítica de mureína (mlt), uma proteína auxiliar do SSTT. Inserção aleatória de transposons foi utilizada para gerar o mutante cromossomal XacΔmltB e mutação sítio-dirigida foi utilizada para gerar o mutante plasmidial XacΔmlt. Usando ISXax2 de Xac como exemplo demonstramos que a cópia plasmidial de mltB (mlt) era funcional e requerida para gerar sintomas in vivo. Ensaios de transposição demonstraram taxas para ISXax2 com uma frequência de cerca de 1.65 x 10-5. Neste estudo nós usamos uma mistura de abordagens experimentais e de bioinformática para elucidar o papel e comportamento desse potencial elemento transponível no plasmídeo de Xac. Demonstramos que a estrutura completa foi capaz de sofrer transposição e que Cassetes de Inserção Móveis (MICs) contendo efetores TAL também poderiam ser mobilizados. Estes resultados mostram forte evidência que em Xac e espécies relacionadas, genes de virulência e patogenicidade podem se espalhar através de um mecanismo de transposição do tipo TN3, usando para tanto plasmídeos conjugativos como vetores intercelulares. Propomos ...Universidade Estadual Paulista (Unesp)Ferro, Jesus Aparecido [UNESP]Varani, Alessandro de Mello [UNESP]Universidade Estadual Paulista (Unesp)Ferreira, Rafael Marini [UNESP]2015-04-09T12:28:14Z2015-04-09T12:28:14Z2014-07-11info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisx, 63 p. : il.application/pdfFERREIRA, Rafael Marini. Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri. 2014. x, 63 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal, 2014.http://hdl.handle.net/11449/121984000819171000819171.pdf33004102029P601472417236124649429712259649346Alephreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPenginfo:eu-repo/semantics/openAccess2024-06-05T14:59:51Zoai:repositorio.unesp.br:11449/121984Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:33:16.384249Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
title Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
spellingShingle Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
Ferreira, Rafael Marini [UNESP]
Cítricos - Doenças e pragas
Cancro citrico
Bacterias fitopatogenicas
Xanthomonas
Genômica
Proteínas
Genetica vegetal
Genomics
title_short Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
title_full Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
title_fullStr Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
title_full_unstemmed Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
title_sort Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri
author Ferreira, Rafael Marini [UNESP]
author_facet Ferreira, Rafael Marini [UNESP]
author_role author
dc.contributor.none.fl_str_mv Ferro, Jesus Aparecido [UNESP]
Varani, Alessandro de Mello [UNESP]
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Ferreira, Rafael Marini [UNESP]
dc.subject.por.fl_str_mv Cítricos - Doenças e pragas
Cancro citrico
Bacterias fitopatogenicas
Xanthomonas
Genômica
Proteínas
Genetica vegetal
Genomics
topic Cítricos - Doenças e pragas
Cancro citrico
Bacterias fitopatogenicas
Xanthomonas
Genômica
Proteínas
Genetica vegetal
Genomics
description Citrus canker (CC) is an important disease affecting many citrus species. It can result from infection by Xanthomonas citri subsp. citri (Xac) and can be transmitted by water, contact or propagation of infected leaves. Comparative studies have shown that one of the most intriguing features within the Xanthomonas genus is the extraordinary genome plasticity and highly mosaic architecture. This is largely the consequence of genomic rearrangements involving several genomic islands (GI), insertion sequences (IS), and few prophages insertion events. High quality IS annotation coupled with comparative genomics revealed a complete transposon of the Tn3 family in the Xanthomonas citri genome (ISXax2), with several T3SEs passenger genes, including a highly conserved lytic murein transglycosylase (mlt), a helper protein of the T3SS. Random transposon insertion was used to generate XacΔmltB and site directed mutagenesis was used to generate the XacΔmlt mutant. Using ISXax2 from Xac as an example we demonstrated that the plasmid copy of mltB (mlt) was indeed functional and required to generate symptoms in vivo. Transposition assays showed transposition rates for ISXax2 with a frequency of about 1.65 x 10-5. In this study we have used a mixture of bioinformatic and experimental approaches to address the role and behavior of such potentially transposable element. We showed that the entire structure was capable of transposition and that MICs (Mobile Insertion Cassettes) containing TAL effectors could also be mobilized. These results provide strong evidence that, in the case of Xac and closely related species, pathogenicity and virulence genes can be spread by a Tn3-like transposition mechanism, using conjugative plasmids as intercellular vectors. We propose that this process is a key agent to modulate the bacterial virulence and the host-specificity in this group of plant pathogens
publishDate 2014
dc.date.none.fl_str_mv 2014-07-11
2015-04-09T12:28:14Z
2015-04-09T12:28:14Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv FERREIRA, Rafael Marini. Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri. 2014. x, 63 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal, 2014.
http://hdl.handle.net/11449/121984
000819171
000819171.pdf
33004102029P6
0147241723612464
9429712259649346
identifier_str_mv FERREIRA, Rafael Marini. Identification and characterization of ISXax2, a TN3-like transposable element potentially related with the virulence and pathogenicity of Xanthomonas citri subsp. citri. 2014. x, 63 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal, 2014.
000819171
000819171.pdf
33004102029P6
0147241723612464
9429712259649346
url http://hdl.handle.net/11449/121984
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv x, 63 p. : il.
application/pdf
dc.publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.source.none.fl_str_mv Aleph
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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