GHap: An R package for genome-wide haplotyping
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1093/bioinformatics/btw356 http://hdl.handle.net/11449/173672 |
Resumo: | The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. |
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Repositório Institucional da UNESP |
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spelling |
GHap: An R package for genome-wide haplotypingThe GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Departamento de Medicina Veterinária Preventiva e Reprodução Animal UNESP - Univ. Estadual Paulista Faculdade de Ciências Agrárias e VeterináriasInternational Atomic Energy Agency (IAEA) Collaborating Centre on Animal Genomics and BioinformaticsDepartamento de Apoio Produção e Saúde Animal UNESP - Univ. Estadual Paulista Faculdade de Medicina Veterinária de AraçatubaIstituto di Zootecnica Universitá Cattolica del Sacro CuoreDepartamento de Medicina Veterinária Preventiva e Reprodução Animal UNESP - Univ. Estadual Paulista Faculdade de Ciências Agrárias e VeterináriasDepartamento de Apoio Produção e Saúde Animal UNESP - Univ. Estadual Paulista Faculdade de Medicina Veterinária de AraçatubaUniversidade Estadual Paulista (Unesp)Collaborating Centre on Animal Genomics and BioinformaticsUniversitá Cattolica del Sacro CuoreUtsunomiya, Yuri T. [UNESP]Milanesi, Marco [UNESP]Utsunomiya, Adam T. H. [UNESP]Ajmone-Marsan, PaoloGarcia, José F. [UNESP]2018-12-11T17:07:11Z2018-12-11T17:07:11Z2016-09-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article2861-2862application/pdfhttp://dx.doi.org/10.1093/bioinformatics/btw356Bioinformatics, v. 32, n. 18, p. 2861-2862, 2016.1460-20591367-4803http://hdl.handle.net/11449/17367210.1093/bioinformatics/btw3562-s2.0-849922025172-s2.0-84992202517.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBioinformatics6,140info:eu-repo/semantics/openAccess2024-09-04T19:15:38Zoai:repositorio.unesp.br:11449/173672Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:38Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
GHap: An R package for genome-wide haplotyping |
title |
GHap: An R package for genome-wide haplotyping |
spellingShingle |
GHap: An R package for genome-wide haplotyping Utsunomiya, Yuri T. [UNESP] |
title_short |
GHap: An R package for genome-wide haplotyping |
title_full |
GHap: An R package for genome-wide haplotyping |
title_fullStr |
GHap: An R package for genome-wide haplotyping |
title_full_unstemmed |
GHap: An R package for genome-wide haplotyping |
title_sort |
GHap: An R package for genome-wide haplotyping |
author |
Utsunomiya, Yuri T. [UNESP] |
author_facet |
Utsunomiya, Yuri T. [UNESP] Milanesi, Marco [UNESP] Utsunomiya, Adam T. H. [UNESP] Ajmone-Marsan, Paolo Garcia, José F. [UNESP] |
author_role |
author |
author2 |
Milanesi, Marco [UNESP] Utsunomiya, Adam T. H. [UNESP] Ajmone-Marsan, Paolo Garcia, José F. [UNESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Collaborating Centre on Animal Genomics and Bioinformatics Universitá Cattolica del Sacro Cuore |
dc.contributor.author.fl_str_mv |
Utsunomiya, Yuri T. [UNESP] Milanesi, Marco [UNESP] Utsunomiya, Adam T. H. [UNESP] Ajmone-Marsan, Paolo Garcia, José F. [UNESP] |
description |
The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-09-15 2018-12-11T17:07:11Z 2018-12-11T17:07:11Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1093/bioinformatics/btw356 Bioinformatics, v. 32, n. 18, p. 2861-2862, 2016. 1460-2059 1367-4803 http://hdl.handle.net/11449/173672 10.1093/bioinformatics/btw356 2-s2.0-84992202517 2-s2.0-84992202517.pdf |
url |
http://dx.doi.org/10.1093/bioinformatics/btw356 http://hdl.handle.net/11449/173672 |
identifier_str_mv |
Bioinformatics, v. 32, n. 18, p. 2861-2862, 2016. 1460-2059 1367-4803 10.1093/bioinformatics/btw356 2-s2.0-84992202517 2-s2.0-84992202517.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Bioinformatics 6,140 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
2861-2862 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021391877013504 |