Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America

Detalhes bibliográficos
Autor(a) principal: Bagley, Justin C.
Data de Publicação: 2017
Outros Autores: Matamoros, Wilfredo A., McMahan, Caleb D., Tobler, Michael, Chakrabarty, Prosanta, Johnson, Jerald B.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://hdl.handle.net/11449/159538
Resumo: We investigate phylogeographic patterns and delimit species boundaries within Amatitlania, a genus of Central American cichlid fishes. Phylogenetic analyses of mitochondrial DNA sequences from 318 individuals spanning the geographical ranges of all three currently recognized Amatitlania species strongly supported one major clade, with a relatively diverged subclade corresponding to A. kanna samples from eastern Costa Rica and Panama. Gene trees and networks revealed marked incongruences between phylogeographic structure and morpho-species taxonomy as a result of species-level polyphyly. Bayes factor comparisons of species delimitation models accounting for incomplete lineage sorting under the multispecies coalescent decisively supported the recognition of two distinct species within Amatitlania corresponding to Amatitlania nigrofasciata and A. kanna lineages. The only clearly genetically and morphologically diagnosable species was A. kanna. These results strongly suggest that incomplete lineage sorting provides the best explanation for the polyphyly of A. kanna, whereas the polyphyly of A. siquia is likely a result of an imperfect taxonomy. Additional insights from coalescent-dating, network, and historical demographic analyses suggested that the two species of Amatitlania diversified only since the early Pleistocene, and that A. nigrofasciata experienced population expansions from approximately 200 000 years ago in the mid-late Pleistocene onward. We discuss implications of our results for the taxonomy and evolutionary history of Amatitlania and, more broadly, of Central American freshwater fishes. (C) 2016 The Linnean Society of London
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spelling Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central AmericaBEASTBayes factor delimitationfreshwater fisheshistorical demographymitochondrial DNAmodel comparisonspecies treestaxonomyWe investigate phylogeographic patterns and delimit species boundaries within Amatitlania, a genus of Central American cichlid fishes. Phylogenetic analyses of mitochondrial DNA sequences from 318 individuals spanning the geographical ranges of all three currently recognized Amatitlania species strongly supported one major clade, with a relatively diverged subclade corresponding to A. kanna samples from eastern Costa Rica and Panama. Gene trees and networks revealed marked incongruences between phylogeographic structure and morpho-species taxonomy as a result of species-level polyphyly. Bayes factor comparisons of species delimitation models accounting for incomplete lineage sorting under the multispecies coalescent decisively supported the recognition of two distinct species within Amatitlania corresponding to Amatitlania nigrofasciata and A. kanna lineages. The only clearly genetically and morphologically diagnosable species was A. kanna. These results strongly suggest that incomplete lineage sorting provides the best explanation for the polyphyly of A. kanna, whereas the polyphyly of A. siquia is likely a result of an imperfect taxonomy. Additional insights from coalescent-dating, network, and historical demographic analyses suggested that the two species of Amatitlania diversified only since the early Pleistocene, and that A. nigrofasciata experienced population expansions from approximately 200 000 years ago in the mid-late Pleistocene onward. We discuss implications of our results for the taxonomy and evolutionary history of Amatitlania and, more broadly, of Central American freshwater fishes. (C) 2016 The Linnean Society of LondonBYU Graduate Research FellowshipBYU Mentoring Environment grantUS National Science Foundation (NSF) PIRE grantNSF Doctoral Dissertation Improvement GrantNSFAmerican Cichlid AssociationBrigham Young Univ, Dept Biol, Evolutionary Ecol Labs, Provo, UT 84602 USAUniv Ciencias & Artes Chiapas, Museo Zool, Fac Ciencias Biol, Colecc Ictiol, Tuxtla Gutierrez 29039, Chiapas, MexicoLouisiana State Univ, Dept Biol Sci, Museum Nat Sci Ichthyol, Baton Rouge, LA 70803 USAField Museum Nat Hist, 1400 S Lake Shore Dr, Chicago, IL 60605 USAKansas State Univ, Div Biol, Manhattan, KS 66506 USABrigham Young Univ, Monte L Bean Life Sci Museum, Provo, UT 84602 USAUS National Science Foundation (NSF) PIRE grant: OISE PIRE-0530267NSF Doctoral Dissertation Improvement Grant: DEB-1210883NSF: DEB-1311408NSF: DEB-0916695NSF: DEB-1354149Wiley-BlackwellBrigham Young UnivUniv Ciencias & Artes ChiapasLouisiana State UnivField Museum Nat HistKansas State UnivUniversidade Estadual Paulista (Unesp)Bagley, Justin C.Matamoros, Wilfredo A.McMahan, Caleb D.Tobler, MichaelChakrabarty, ProsantaJohnson, Jerald B.2018-11-26T15:44:12Z2018-11-26T15:44:12Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article155-170application/pdfBiological Journal Of The Linnean Society. Hoboken: Wiley, v. 120, n. 1, p. 155-170, 2017.0024-4066http://hdl.handle.net/11449/159538WOS:000400943400011WOS000400943400011.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiological Journal Of The Linnean Society1,175info:eu-repo/semantics/openAccess2023-12-02T06:12:18Zoai:repositorio.unesp.br:11449/159538Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:17:16.155460Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
title Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
spellingShingle Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
Bagley, Justin C.
BEAST
Bayes factor delimitation
freshwater fishes
historical demography
mitochondrial DNA
model comparison
species trees
taxonomy
title_short Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
title_full Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
title_fullStr Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
title_full_unstemmed Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
title_sort Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): implications for taxonomy and Plio-Pleistocene evolutionary history in Central America
author Bagley, Justin C.
author_facet Bagley, Justin C.
Matamoros, Wilfredo A.
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.
author_role author
author2 Matamoros, Wilfredo A.
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Brigham Young Univ
Univ Ciencias & Artes Chiapas
Louisiana State Univ
Field Museum Nat Hist
Kansas State Univ
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Bagley, Justin C.
Matamoros, Wilfredo A.
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.
dc.subject.por.fl_str_mv BEAST
Bayes factor delimitation
freshwater fishes
historical demography
mitochondrial DNA
model comparison
species trees
taxonomy
topic BEAST
Bayes factor delimitation
freshwater fishes
historical demography
mitochondrial DNA
model comparison
species trees
taxonomy
description We investigate phylogeographic patterns and delimit species boundaries within Amatitlania, a genus of Central American cichlid fishes. Phylogenetic analyses of mitochondrial DNA sequences from 318 individuals spanning the geographical ranges of all three currently recognized Amatitlania species strongly supported one major clade, with a relatively diverged subclade corresponding to A. kanna samples from eastern Costa Rica and Panama. Gene trees and networks revealed marked incongruences between phylogeographic structure and morpho-species taxonomy as a result of species-level polyphyly. Bayes factor comparisons of species delimitation models accounting for incomplete lineage sorting under the multispecies coalescent decisively supported the recognition of two distinct species within Amatitlania corresponding to Amatitlania nigrofasciata and A. kanna lineages. The only clearly genetically and morphologically diagnosable species was A. kanna. These results strongly suggest that incomplete lineage sorting provides the best explanation for the polyphyly of A. kanna, whereas the polyphyly of A. siquia is likely a result of an imperfect taxonomy. Additional insights from coalescent-dating, network, and historical demographic analyses suggested that the two species of Amatitlania diversified only since the early Pleistocene, and that A. nigrofasciata experienced population expansions from approximately 200 000 years ago in the mid-late Pleistocene onward. We discuss implications of our results for the taxonomy and evolutionary history of Amatitlania and, more broadly, of Central American freshwater fishes. (C) 2016 The Linnean Society of London
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
2018-11-26T15:44:12Z
2018-11-26T15:44:12Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Biological Journal Of The Linnean Society. Hoboken: Wiley, v. 120, n. 1, p. 155-170, 2017.
0024-4066
http://hdl.handle.net/11449/159538
WOS:000400943400011
WOS000400943400011.pdf
identifier_str_mv Biological Journal Of The Linnean Society. Hoboken: Wiley, v. 120, n. 1, p. 155-170, 2017.
0024-4066
WOS:000400943400011
WOS000400943400011.pdf
url http://hdl.handle.net/11449/159538
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Biological Journal Of The Linnean Society
1,175
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 155-170
application/pdf
dc.publisher.none.fl_str_mv Wiley-Blackwell
publisher.none.fl_str_mv Wiley-Blackwell
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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