Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
Autor(a) principal: | |
---|---|
Data de Publicação: | 2016 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1038/sdata.2016.97 http://hdl.handle.net/11449/169130 |
Resumo: | The Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs. |
id |
UNSP_f90a33098649011866d0284ede664b37 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/169130 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis melliferaThe Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Natural Sciences and Engineering Research Council of CanadaDepartamento de Produ��o Animal Faculdade de Medicina Veterin�ria e Zootecnia Univ Estadual Paulista UNESPDepartment of Biology Faculty of Sciences York UniversityDepartamento de Produ��o Animal Faculdade de Medicina Veterin�ria e Zootecnia Univ Estadual Paulista UNESPFAPESP: 2014/10150-2Universidade Estadual Paulista (Unesp)York UniversityKadri, Samir M. [UNESP]Harpur, Brock A.Orsi, Ricardo O. [UNESP]Zayed, Amro2018-12-11T16:44:35Z2018-12-11T16:44:35Z2016-11-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1038/sdata.2016.97Scientific Data, v. 3.2052-4463http://hdl.handle.net/11449/16913010.1038/sdata.2016.972-s2.0-849947452052-s2.0-84994745205.pdf2-s2.0-84994745205.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Data3,026info:eu-repo/semantics/openAccess2023-11-29T06:16:51Zoai:repositorio.unesp.br:11449/169130Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:05:12.533349Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
title |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
spellingShingle |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera Kadri, Samir M. [UNESP] |
title_short |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
title_full |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
title_fullStr |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
title_full_unstemmed |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
title_sort |
Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera |
author |
Kadri, Samir M. [UNESP] |
author_facet |
Kadri, Samir M. [UNESP] Harpur, Brock A. Orsi, Ricardo O. [UNESP] Zayed, Amro |
author_role |
author |
author2 |
Harpur, Brock A. Orsi, Ricardo O. [UNESP] Zayed, Amro |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) York University |
dc.contributor.author.fl_str_mv |
Kadri, Samir M. [UNESP] Harpur, Brock A. Orsi, Ricardo O. [UNESP] Zayed, Amro |
description |
The Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-11-08 2018-12-11T16:44:35Z 2018-12-11T16:44:35Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/sdata.2016.97 Scientific Data, v. 3. 2052-4463 http://hdl.handle.net/11449/169130 10.1038/sdata.2016.97 2-s2.0-84994745205 2-s2.0-84994745205.pdf 2-s2.0-84994745205.pdf |
url |
http://dx.doi.org/10.1038/sdata.2016.97 http://hdl.handle.net/11449/169130 |
identifier_str_mv |
Scientific Data, v. 3. 2052-4463 10.1038/sdata.2016.97 2-s2.0-84994745205 2-s2.0-84994745205.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientific Data 3,026 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129017715359744 |