Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants

Detalhes bibliográficos
Autor(a) principal: Guedes, Fernanda Alves de Freitas
Data de Publicação: 2018
Outros Autores: Nobres, Priscilla, Ferreira, Daniela Cristina Rodrigues, Menezes-Silva, Paulo Eduardo, Ribeiro-Alves, Marcelo, Correa, Régis Lopes, DaMatta, Fábio Murilo, Alves-Ferreira, Márcio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/34073
Resumo: 2020-07-15
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spelling Guedes, Fernanda Alves de FreitasNobres, PriscillaFerreira, Daniela Cristina RodriguesMenezes-Silva, Paulo EduardoRibeiro-Alves, MarceloCorrea, Régis LopesDaMatta, Fábio MuriloAlves-Ferreira, Márcio2019-07-15T13:10:49Z2019-07-15T13:10:49Z2018GUEDES, Fernanda Alves de Freitas et al. Transcriptional memory contributes to drought tolerance in coffee (Coffeacanephora) plants. Environmental and Experimental Botany, v. 147, p. 220-233, 2018.0098-8472https://www.arca.fiocruz.br/handle/icict/3407310.1016/j.envexpbot.2017.12.004engElsevierTranscriptional memory contributes to drought tolerance in coffee (Coffea canephora) plantsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article2020-07-15Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Instituto Federal de Educação, Ciência e Tecnologia Goiano. Rio Verde, GO, Brasil.Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas. Rio de Janeiro, RJ, Brasil.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Viçosa, MG, Brasil.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Water deprivation is an important limiting factor in the productivity of crops like coffee. In addition to transcription factors (TFs) and small non-coding RNAs, transcriptional memory seems to act in gene expression modulation during plant drought response. Here, a RNA-Seq approach was used to investigate the drought responses of Coffea canephora clones 109 and 120, which are respectively sensitive and tolerant to drought. Illumina sequencing allowed us to identify differentially expressed genes (DEG) in the tolerant (826) and sensitive (135) clones and their enriched categories. Our results indicate that the sensitive clone may trigger anoxidative stress response, possibly leading to programmed cell death, when exposed to multiple drought epi-sodes. The acclimation of tolerant plants, on the other hand, seems to involve antioxidant secondary metabolismand the ABA response. Most importantly, 49 memory genes were identified in the tolerant clone. They were mainly linked to the ABA pathway, protein folding and biotic stress. Small RNA profiling also identified regulatory microRNAs in coffee leaves, including hundreds of putative novel ones. Our findings strongly suggest that transcriptional memory modulates the expression of drought-responsive genes and contributes to drought tolerance in C. canephora.Abscisic acidCoffea canephoraDroughtOxidative stressReceptor-like kinasesTranscriptional memoryinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txttext/plain1748https://www.arca.fiocruz.br/bitstream/icict/34073/1/license.txt8a4605be74aa9ea9d79846c1fba20a33MD51ORIGINALve_Guedes_Fernanda_etal_INI_2018.pdfve_Guedes_Fernanda_etal_INI_2018.pdfapplication/pdf1851821https://www.arca.fiocruz.br/bitstream/icict/34073/2/ve_Guedes_Fernanda_etal_INI_2018.pdf75d766f6ac3124a71067133cac779a2aMD52TEXTve_Guedes_Fernanda_etal_INI_2018.pdf.txtve_Guedes_Fernanda_etal_INI_2018.pdf.txtExtracted texttext/plain81656https://www.arca.fiocruz.br/bitstream/icict/34073/3/ve_Guedes_Fernanda_etal_INI_2018.pdf.txtb61adf75ef26b312223a6292664382f3MD53icict/340732021-03-24 16:32:34.311oai:www.arca.fiocruz.br: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Repositório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352021-03-24T19:32:34Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)false
dc.title.pt_BR.fl_str_mv Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
title Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
spellingShingle Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
Guedes, Fernanda Alves de Freitas
Abscisic acid
Coffea canephora
Drought
Oxidative stress
Receptor-like kinases
Transcriptional memory
title_short Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
title_full Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
title_fullStr Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
title_full_unstemmed Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
title_sort Transcriptional memory contributes to drought tolerance in coffee (Coffea canephora) plants
author Guedes, Fernanda Alves de Freitas
author_facet Guedes, Fernanda Alves de Freitas
Nobres, Priscilla
Ferreira, Daniela Cristina Rodrigues
Menezes-Silva, Paulo Eduardo
Ribeiro-Alves, Marcelo
Correa, Régis Lopes
DaMatta, Fábio Murilo
Alves-Ferreira, Márcio
author_role author
author2 Nobres, Priscilla
Ferreira, Daniela Cristina Rodrigues
Menezes-Silva, Paulo Eduardo
Ribeiro-Alves, Marcelo
Correa, Régis Lopes
DaMatta, Fábio Murilo
Alves-Ferreira, Márcio
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Guedes, Fernanda Alves de Freitas
Nobres, Priscilla
Ferreira, Daniela Cristina Rodrigues
Menezes-Silva, Paulo Eduardo
Ribeiro-Alves, Marcelo
Correa, Régis Lopes
DaMatta, Fábio Murilo
Alves-Ferreira, Márcio
dc.subject.en.pt_BR.fl_str_mv Abscisic acid
Coffea canephora
Drought
Oxidative stress
Receptor-like kinases
Transcriptional memory
topic Abscisic acid
Coffea canephora
Drought
Oxidative stress
Receptor-like kinases
Transcriptional memory
description 2020-07-15
publishDate 2018
dc.date.issued.fl_str_mv 2018
dc.date.accessioned.fl_str_mv 2019-07-15T13:10:49Z
dc.date.available.fl_str_mv 2019-07-15T13:10:49Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv GUEDES, Fernanda Alves de Freitas et al. Transcriptional memory contributes to drought tolerance in coffee (Coffeacanephora) plants. Environmental and Experimental Botany, v. 147, p. 220-233, 2018.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/34073
dc.identifier.issn.pt_BR.fl_str_mv 0098-8472
dc.identifier.doi.none.fl_str_mv 10.1016/j.envexpbot.2017.12.004
identifier_str_mv GUEDES, Fernanda Alves de Freitas et al. Transcriptional memory contributes to drought tolerance in coffee (Coffeacanephora) plants. Environmental and Experimental Botany, v. 147, p. 220-233, 2018.
0098-8472
10.1016/j.envexpbot.2017.12.004
url https://www.arca.fiocruz.br/handle/icict/34073
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
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instname_str Fundação Oswaldo Cruz (FIOCRUZ)
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