Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.

Detalhes bibliográficos
Autor(a) principal: MARCOLINO-GOMES, J.
Data de Publicação: 2013
Outros Autores: RODRIGUES, F. A., OLIVEIRA, M. C. N. de, FARIAS, J. R. B., NEUMAIER, N., ABDELNOOR, R. V., MARCELINO-GUIMARÃES, F. C., NEPOMUCENO, A. L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/957405
Resumo: Soybean farming has faced several losses in productivity due to drought events in the last few decades. However, plants have molecular mechanisms to prevent and protect against water deficit injuries, and transcription factors play an important role in triggering different defense mechanisms. Understanding the expression patterns of transcription factors in response to water deficit and to environmental diurnal changes is very important for unveiling water deficit stress tolerance mechanisms. Here, we analyzed the expression patterns of ten APETALA2/Ethylene Responsive Element Binding-like (AP2/ EREB-like) transcription factors in two soybean genotypes (BR16: drought-sensitive; and Embrapa 48: drought-tolerant). According to phylogenetic and domain analyses, these genes can be included in the DREB and ERF subfamilies. We also analyzed a GmDRIP-like gene that encodes a DREB negative regulator. We detected the up-regulation of 9 GmAP2/EREB-like genes and identified transcriptional differences that were dependent on the levels of the stress applied and the tissue type analyzed (the expression of the GmDREB1F-like gene, for example, was four times higher in roots than in leaves). The GmDRIP-like gene was not induced by water deficit in BR16 during the longest periods of stress, but was significantly induced in Embrapa 48; this suggests a possible genetic/molecular difference between the responses of these cultivars to water deficit stress. Additionally, RNAseq gene expression analysis over a 24-h time course indicates that the expression patterns of several GmDREB-like genes are subject to oscillation over the course of the day, indicating a possible circadian regulation.
id EMBR_336d0ac20308f759ccc264e2edc29cfa
oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/957405
network_acronym_str EMBR
network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository_id_str 2154
spelling Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.SojaSoybean farming has faced several losses in productivity due to drought events in the last few decades. However, plants have molecular mechanisms to prevent and protect against water deficit injuries, and transcription factors play an important role in triggering different defense mechanisms. Understanding the expression patterns of transcription factors in response to water deficit and to environmental diurnal changes is very important for unveiling water deficit stress tolerance mechanisms. Here, we analyzed the expression patterns of ten APETALA2/Ethylene Responsive Element Binding-like (AP2/ EREB-like) transcription factors in two soybean genotypes (BR16: drought-sensitive; and Embrapa 48: drought-tolerant). According to phylogenetic and domain analyses, these genes can be included in the DREB and ERF subfamilies. We also analyzed a GmDRIP-like gene that encodes a DREB negative regulator. We detected the up-regulation of 9 GmAP2/EREB-like genes and identified transcriptional differences that were dependent on the levels of the stress applied and the tissue type analyzed (the expression of the GmDREB1F-like gene, for example, was four times higher in roots than in leaves). The GmDRIP-like gene was not induced by water deficit in BR16 during the longest periods of stress, but was significantly induced in Embrapa 48; this suggests a possible genetic/molecular difference between the responses of these cultivars to water deficit stress. Additionally, RNAseq gene expression analysis over a 24-h time course indicates that the expression patterns of several GmDREB-like genes are subject to oscillation over the course of the day, indicating a possible circadian regulation.JULIANA MARCOLINO-GOMES, UEL; FABIANA APARECIDA RODRIGUES; MARIA CRISTINA NEVES DE OLIVEIRA, CNPSO; JOSE RENATO BOUCAS FARIAS, CNPSO; NORMAN NEUMAIER, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI.MARCOLINO-GOMES, J.RODRIGUES, F. A.OLIVEIRA, M. C. N. deFARIAS, J. R. B.NEUMAIER, N.ABDELNOOR, R. V.MARCELINO-GUIMARÃES, F. C.NEPOMUCENO, A. L.2013-05-08T11:11:11Z2013-05-08T11:11:11Z2013-05-0820132015-11-11T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article11 p.Plos One, v. 8, n. 5, p. 1-11, May 2013.http://www.alice.cnptia.embrapa.br/alice/handle/doc/95740510.1371/journal.pone.0062294enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T01:00:42Zoai:www.alice.cnptia.embrapa.br:doc/957405Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T01:00:42falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T01:00:42Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
title Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
spellingShingle Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
MARCOLINO-GOMES, J.
Soja
title_short Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
title_full Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
title_fullStr Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
title_full_unstemmed Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
title_sort Expression patterns of GmAP2/EREB-Like transcription factors involved in soybean responses to water deficit.
author MARCOLINO-GOMES, J.
author_facet MARCOLINO-GOMES, J.
RODRIGUES, F. A.
OLIVEIRA, M. C. N. de
FARIAS, J. R. B.
NEUMAIER, N.
ABDELNOOR, R. V.
MARCELINO-GUIMARÃES, F. C.
NEPOMUCENO, A. L.
author_role author
author2 RODRIGUES, F. A.
OLIVEIRA, M. C. N. de
FARIAS, J. R. B.
NEUMAIER, N.
ABDELNOOR, R. V.
MARCELINO-GUIMARÃES, F. C.
NEPOMUCENO, A. L.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv JULIANA MARCOLINO-GOMES, UEL; FABIANA APARECIDA RODRIGUES; MARIA CRISTINA NEVES DE OLIVEIRA, CNPSO; JOSE RENATO BOUCAS FARIAS, CNPSO; NORMAN NEUMAIER, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI.
dc.contributor.author.fl_str_mv MARCOLINO-GOMES, J.
RODRIGUES, F. A.
OLIVEIRA, M. C. N. de
FARIAS, J. R. B.
NEUMAIER, N.
ABDELNOOR, R. V.
MARCELINO-GUIMARÃES, F. C.
NEPOMUCENO, A. L.
dc.subject.por.fl_str_mv Soja
topic Soja
description Soybean farming has faced several losses in productivity due to drought events in the last few decades. However, plants have molecular mechanisms to prevent and protect against water deficit injuries, and transcription factors play an important role in triggering different defense mechanisms. Understanding the expression patterns of transcription factors in response to water deficit and to environmental diurnal changes is very important for unveiling water deficit stress tolerance mechanisms. Here, we analyzed the expression patterns of ten APETALA2/Ethylene Responsive Element Binding-like (AP2/ EREB-like) transcription factors in two soybean genotypes (BR16: drought-sensitive; and Embrapa 48: drought-tolerant). According to phylogenetic and domain analyses, these genes can be included in the DREB and ERF subfamilies. We also analyzed a GmDRIP-like gene that encodes a DREB negative regulator. We detected the up-regulation of 9 GmAP2/EREB-like genes and identified transcriptional differences that were dependent on the levels of the stress applied and the tissue type analyzed (the expression of the GmDREB1F-like gene, for example, was four times higher in roots than in leaves). The GmDRIP-like gene was not induced by water deficit in BR16 during the longest periods of stress, but was significantly induced in Embrapa 48; this suggests a possible genetic/molecular difference between the responses of these cultivars to water deficit stress. Additionally, RNAseq gene expression analysis over a 24-h time course indicates that the expression patterns of several GmDREB-like genes are subject to oscillation over the course of the day, indicating a possible circadian regulation.
publishDate 2013
dc.date.none.fl_str_mv 2013-05-08T11:11:11Z
2013-05-08T11:11:11Z
2013-05-08
2013
2015-11-11T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Plos One, v. 8, n. 5, p. 1-11, May 2013.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/957405
10.1371/journal.pone.0062294
identifier_str_mv Plos One, v. 8, n. 5, p. 1-11, May 2013.
10.1371/journal.pone.0062294
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/957405
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 11 p.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503388036071424