Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.

Detalhes bibliográficos
Autor(a) principal: MOTTA, L. B.
Data de Publicação: 2014
Outros Autores: SOARES, T. C. B., FERRAO, M. A. G., CAIXETA, E. T., LORENZON, R. M., SOUZA NETO, J. D. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193
Resumo: The molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora.
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spelling Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.Coffea ArábicaCoffea CanephoraThe molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora.Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Rodrigo Monte Lorenzon, Universidade Federal do Espírito Santo; José Dias de Souza Neto, Universidade Federal do Espírito Santo.MOTTA, L. B.SOARES, T. C. B.FERRAO, M. A. G.CAIXETA, E. T.LORENZON, R. M.SOUZA NETO, J. D. de2020-10-01T09:12:22Z2020-10-01T09:12:22Z2020-09-302014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014.http://www.alice.cnptia.embrapa.br/alice/handle/doc/112519310.1590/S1516-8913201402071enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-10-01T09:12:28Zoai:www.alice.cnptia.embrapa.br:doc/1125193Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-10-01T09:12:28falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-10-01T09:12:28Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
title Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
spellingShingle Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
MOTTA, L. B.
Coffea Arábica
Coffea Canephora
title_short Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
title_full Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
title_fullStr Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
title_full_unstemmed Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
title_sort Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
author MOTTA, L. B.
author_facet MOTTA, L. B.
SOARES, T. C. B.
FERRAO, M. A. G.
CAIXETA, E. T.
LORENZON, R. M.
SOUZA NETO, J. D. de
author_role author
author2 SOARES, T. C. B.
FERRAO, M. A. G.
CAIXETA, E. T.
LORENZON, R. M.
SOUZA NETO, J. D. de
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Rodrigo Monte Lorenzon, Universidade Federal do Espírito Santo; José Dias de Souza Neto, Universidade Federal do Espírito Santo.
dc.contributor.author.fl_str_mv MOTTA, L. B.
SOARES, T. C. B.
FERRAO, M. A. G.
CAIXETA, E. T.
LORENZON, R. M.
SOUZA NETO, J. D. de
dc.subject.por.fl_str_mv Coffea Arábica
Coffea Canephora
topic Coffea Arábica
Coffea Canephora
description The molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora.
publishDate 2014
dc.date.none.fl_str_mv 2014
2020-10-01T09:12:22Z
2020-10-01T09:12:22Z
2020-09-30
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Brazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193
10.1590/S1516-8913201402071
identifier_str_mv Brazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014.
10.1590/S1516-8913201402071
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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