Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.

Detalhes bibliográficos
Autor(a) principal: SANTOS, I. G. dos
Data de Publicação: 2019
Outros Autores: CRUZ, C. D., NASCIMENTO, M., FERREIRA, R. de P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109207
Resumo: The efficiency of a selection index generally depends on the quality of the variance matrixes, which demands controlled experiments. Using Artificial Neural Networks (ANNs) trained from a selection index is advantageous for selecting genotypes since an ANN has the capacity to classify genotypes in an automated way. We propose the use of ANNs for the selection of alfalfa genotypes, based on a selection index. Data were collected from 77 alfalfa genotypes evaluated based on nine traits from four cuttings. The traits were divided into forage yield and nutritive value groups. In order for the ANNs to learn the classification pattern, the Tai index was used, which allows secondary traits to be included in the index to improve the gains of the main traits. An index was established for each group of traits, and based on the index scores the genotypes were subdivided into four classes (optimal, good, medium, and bad). After testing different topologies, ANNs were established for each index, according to the apparent error rates. The chosen ANNs were efficient in classifying the genotypes since the highest apparent error rate reached 15%, meaning that the ANNs efficiently captured the data pattern. Considering the ANN classification for both groups of traits, there was a high degree of agreement with the classification obtained from the Tai index, as expected. Even in the cuttings where the ANNs presented the worst performance, their potential to classify alfalfa genotypes was clear, because the wrong classifications were placed in groups close to the correct ones. This ensured that the best genotypes did not run the risk of being discarded, since they would not classified in the group of bad genotypes. The ANNs that were developed have good potential for use in alfalfa breeding programs.
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spelling Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.Tai indexComputational intelligenceMedicago SativaThe efficiency of a selection index generally depends on the quality of the variance matrixes, which demands controlled experiments. Using Artificial Neural Networks (ANNs) trained from a selection index is advantageous for selecting genotypes since an ANN has the capacity to classify genotypes in an automated way. We propose the use of ANNs for the selection of alfalfa genotypes, based on a selection index. Data were collected from 77 alfalfa genotypes evaluated based on nine traits from four cuttings. The traits were divided into forage yield and nutritive value groups. In order for the ANNs to learn the classification pattern, the Tai index was used, which allows secondary traits to be included in the index to improve the gains of the main traits. An index was established for each group of traits, and based on the index scores the genotypes were subdivided into four classes (optimal, good, medium, and bad). After testing different topologies, ANNs were established for each index, according to the apparent error rates. The chosen ANNs were efficient in classifying the genotypes since the highest apparent error rate reached 15%, meaning that the ANNs efficiently captured the data pattern. Considering the ANN classification for both groups of traits, there was a high degree of agreement with the classification obtained from the Tai index, as expected. Even in the cuttings where the ANNs presented the worst performance, their potential to classify alfalfa genotypes was clear, because the wrong classifications were placed in groups close to the correct ones. This ensured that the best genotypes did not run the risk of being discarded, since they would not classified in the group of bad genotypes. The ANNs that were developed have good potential for use in alfalfa breeding programs.Iara Gonçalves dos Santos, UFV; Cosme Damião Cruz, UFV; Moysés Nascimento, UFV; REINALDO DE PAULA FERREIRA, CPPSE.SANTOS, I. G. dosCRUZ, C. D.NASCIMENTO, M.FERREIRA, R. de P.2019-05-22T01:12:00Z2019-05-22T01:12:00Z2019-05-2120192020-01-10T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 18, n. 2, gmr18221, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109207doi.org/10.4238/gmr18221enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-05-22T01:12:07Zoai:www.alice.cnptia.embrapa.br:doc/1109207Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-05-22T01:12:07falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-05-22T01:12:07Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
title Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
spellingShingle Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
SANTOS, I. G. dos
Tai index
Computational intelligence
Medicago Sativa
title_short Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
title_full Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
title_fullStr Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
title_full_unstemmed Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
title_sort Selection index as a priori information for using artificial neural networks to classify alfalfa genotypes.
author SANTOS, I. G. dos
author_facet SANTOS, I. G. dos
CRUZ, C. D.
NASCIMENTO, M.
FERREIRA, R. de P.
author_role author
author2 CRUZ, C. D.
NASCIMENTO, M.
FERREIRA, R. de P.
author2_role author
author
author
dc.contributor.none.fl_str_mv Iara Gonçalves dos Santos, UFV; Cosme Damião Cruz, UFV; Moysés Nascimento, UFV; REINALDO DE PAULA FERREIRA, CPPSE.
dc.contributor.author.fl_str_mv SANTOS, I. G. dos
CRUZ, C. D.
NASCIMENTO, M.
FERREIRA, R. de P.
dc.subject.por.fl_str_mv Tai index
Computational intelligence
Medicago Sativa
topic Tai index
Computational intelligence
Medicago Sativa
description The efficiency of a selection index generally depends on the quality of the variance matrixes, which demands controlled experiments. Using Artificial Neural Networks (ANNs) trained from a selection index is advantageous for selecting genotypes since an ANN has the capacity to classify genotypes in an automated way. We propose the use of ANNs for the selection of alfalfa genotypes, based on a selection index. Data were collected from 77 alfalfa genotypes evaluated based on nine traits from four cuttings. The traits were divided into forage yield and nutritive value groups. In order for the ANNs to learn the classification pattern, the Tai index was used, which allows secondary traits to be included in the index to improve the gains of the main traits. An index was established for each group of traits, and based on the index scores the genotypes were subdivided into four classes (optimal, good, medium, and bad). After testing different topologies, ANNs were established for each index, according to the apparent error rates. The chosen ANNs were efficient in classifying the genotypes since the highest apparent error rate reached 15%, meaning that the ANNs efficiently captured the data pattern. Considering the ANN classification for both groups of traits, there was a high degree of agreement with the classification obtained from the Tai index, as expected. Even in the cuttings where the ANNs presented the worst performance, their potential to classify alfalfa genotypes was clear, because the wrong classifications were placed in groups close to the correct ones. This ensured that the best genotypes did not run the risk of being discarded, since they would not classified in the group of bad genotypes. The ANNs that were developed have good potential for use in alfalfa breeding programs.
publishDate 2019
dc.date.none.fl_str_mv 2019-05-22T01:12:00Z
2019-05-22T01:12:00Z
2019-05-21
2019
2020-01-10T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
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status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 18, n. 2, gmr18221, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109207
doi.org/10.4238/gmr18221
identifier_str_mv Genetics and Molecular Research, v. 18, n. 2, gmr18221, 2019.
doi.org/10.4238/gmr18221
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109207
dc.language.iso.fl_str_mv eng
language eng
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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