Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.

Detalhes bibliográficos
Autor(a) principal: FUGANTI, R.
Data de Publicação: 2010
Outros Autores: MACHADO, M. de F. P. da S., LOPES, V. S., SILVA, J. F. V., ARIAS, C. A. A., MARIN, S. R. R., BINNECK, E., ABDELNOOR, R. V., MARCELINO, F. C., NEPOMUCENO, A. L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/660121
Resumo: During earlier experiments, an SSR molecularmarker (176 SoyHSP) showing high correlation (70%) with resistance/susceptibility to javanese root-knot nematode Meloidogyne javanica was identified in soybean. After being sequenced, results indicated that the SSR 176 Soy HSP marker was inserted in the promoter region of Gmhsp17.6-L gene. It was also detected in this region that resistant genotypes presented insertions between AT(31) and AT(33) in size and susceptible genotypes, AT(9). Gmhsp17.6-L gene coding region presented a perfect match in amino acid sequence in all soybean genotypes. A ribonuclease protection assay showed that Gmhsp17.6-L gene mRNA transcripts were present in all genotypes. A real-time relative quantification (qPCR) indicated in the resistant individuals higher mRNA transcripts levels, which presented in the sequencing more AT(n) insertions. These results suggest that the number ofAT(n) insertions inside this promoter region couldmodulate up or down gene levels. Those findings can lead to the possibility of manipulating, between some limits, the mRNA transcripts levels using different sizes of AT(n) insertions.
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spelling Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.Marcadores molecularesSoybeanNematóide de galhaMeloidogyne JavanicaNematóideSojaDuring earlier experiments, an SSR molecularmarker (176 SoyHSP) showing high correlation (70%) with resistance/susceptibility to javanese root-knot nematode Meloidogyne javanica was identified in soybean. After being sequenced, results indicated that the SSR 176 Soy HSP marker was inserted in the promoter region of Gmhsp17.6-L gene. It was also detected in this region that resistant genotypes presented insertions between AT(31) and AT(33) in size and susceptible genotypes, AT(9). Gmhsp17.6-L gene coding region presented a perfect match in amino acid sequence in all soybean genotypes. A ribonuclease protection assay showed that Gmhsp17.6-L gene mRNA transcripts were present in all genotypes. A real-time relative quantification (qPCR) indicated in the resistant individuals higher mRNA transcripts levels, which presented in the sequencing more AT(n) insertions. These results suggest that the number ofAT(n) insertions inside this promoter region couldmodulate up or down gene levels. Those findings can lead to the possibility of manipulating, between some limits, the mRNA transcripts levels using different sizes of AT(n) insertions.RENATA FUGANTI, UEM; MARIA DE FÁTIMA PIRES DA SILVA MACHADO, UEM; VALÉRIA STEFANIA LOPES, UNIFIL; JOAO FLAVIO VELOSO SILVA, CPAMT; CARLOS ALBERTO ARRABAL ARIAS, CNPSo; SILVANA REGINA ROCKENBACH MARIN, CNPSo; ELISEU BINNECK, CNPSo; RICARDO VILELA ABDELNOOR, CNPSo; FRANCISMAR CORREA MARCELINO, CNPSo; ALEXANDRE LIMA NEPOMUCENO, CNPSo.FUGANTI, R.MACHADO, M. de F. P. da S.LOPES, V. S.SILVA, J. F. V.ARIAS, C. A. A.MARIN, S. R. R.BINNECK, E.ABDELNOOR, R. V.MARCELINO, F. C.NEPOMUCENO, A. L.2011-04-10T11:11:11Z2011-04-10T11:11:11Z2010-03-0820102017-08-03T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9 p.Journal of Biomedicine and Biotechnology, 2010.1110-7251http://www.alice.cnptia.embrapa.br/alice/handle/doc/66012110.1155/2010/847673enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:43:20Zoai:www.alice.cnptia.embrapa.br:doc/660121Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:43:20falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:43:20Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
title Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
spellingShingle Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
FUGANTI, R.
Marcadores moleculares
Soybean
Nematóide de galha
Meloidogyne Javanica
Nematóide
Soja
title_short Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
title_full Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
title_fullStr Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
title_full_unstemmed Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
title_sort Size of AT(n) insertions in promoter region modulates Gmhsp17.6-L gene expression levels.
author FUGANTI, R.
author_facet FUGANTI, R.
MACHADO, M. de F. P. da S.
LOPES, V. S.
SILVA, J. F. V.
ARIAS, C. A. A.
MARIN, S. R. R.
BINNECK, E.
ABDELNOOR, R. V.
MARCELINO, F. C.
NEPOMUCENO, A. L.
author_role author
author2 MACHADO, M. de F. P. da S.
LOPES, V. S.
SILVA, J. F. V.
ARIAS, C. A. A.
MARIN, S. R. R.
BINNECK, E.
ABDELNOOR, R. V.
MARCELINO, F. C.
NEPOMUCENO, A. L.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv RENATA FUGANTI, UEM; MARIA DE FÁTIMA PIRES DA SILVA MACHADO, UEM; VALÉRIA STEFANIA LOPES, UNIFIL; JOAO FLAVIO VELOSO SILVA, CPAMT; CARLOS ALBERTO ARRABAL ARIAS, CNPSo; SILVANA REGINA ROCKENBACH MARIN, CNPSo; ELISEU BINNECK, CNPSo; RICARDO VILELA ABDELNOOR, CNPSo; FRANCISMAR CORREA MARCELINO, CNPSo; ALEXANDRE LIMA NEPOMUCENO, CNPSo.
dc.contributor.author.fl_str_mv FUGANTI, R.
MACHADO, M. de F. P. da S.
LOPES, V. S.
SILVA, J. F. V.
ARIAS, C. A. A.
MARIN, S. R. R.
BINNECK, E.
ABDELNOOR, R. V.
MARCELINO, F. C.
NEPOMUCENO, A. L.
dc.subject.por.fl_str_mv Marcadores moleculares
Soybean
Nematóide de galha
Meloidogyne Javanica
Nematóide
Soja
topic Marcadores moleculares
Soybean
Nematóide de galha
Meloidogyne Javanica
Nematóide
Soja
description During earlier experiments, an SSR molecularmarker (176 SoyHSP) showing high correlation (70%) with resistance/susceptibility to javanese root-knot nematode Meloidogyne javanica was identified in soybean. After being sequenced, results indicated that the SSR 176 Soy HSP marker was inserted in the promoter region of Gmhsp17.6-L gene. It was also detected in this region that resistant genotypes presented insertions between AT(31) and AT(33) in size and susceptible genotypes, AT(9). Gmhsp17.6-L gene coding region presented a perfect match in amino acid sequence in all soybean genotypes. A ribonuclease protection assay showed that Gmhsp17.6-L gene mRNA transcripts were present in all genotypes. A real-time relative quantification (qPCR) indicated in the resistant individuals higher mRNA transcripts levels, which presented in the sequencing more AT(n) insertions. These results suggest that the number ofAT(n) insertions inside this promoter region couldmodulate up or down gene levels. Those findings can lead to the possibility of manipulating, between some limits, the mRNA transcripts levels using different sizes of AT(n) insertions.
publishDate 2010
dc.date.none.fl_str_mv 2010-03-08
2010
2011-04-10T11:11:11Z
2011-04-10T11:11:11Z
2017-08-03T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Journal of Biomedicine and Biotechnology, 2010.
1110-7251
http://www.alice.cnptia.embrapa.br/alice/handle/doc/660121
10.1155/2010/847673
identifier_str_mv Journal of Biomedicine and Biotechnology, 2010.
1110-7251
10.1155/2010/847673
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/660121
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 9 p.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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