Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.

Detalhes bibliográficos
Autor(a) principal: VIDAL, A. K. F.
Data de Publicação: 2021
Outros Autores: DAHER, R. F., ANDRADE, E. K. V. de, FREITAS, R. S., STIDA, W. F., AMARAL JÚNIOR, A. T. do, MENEZES, B. R. da S., PEREIRA, A. V., SILVA, V. B. da, TARDIN, F. D., OLIVEIRA, L. J. da S. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1138016
http://dx.doi.org/10.4238/gmr18944
Resumo: Management of variability in germplasm banks is essential for genetic improvement, so that the breeder can estimate the genetic similarity between cultivars, as well as maintain genetic diversity in breeding programs. Elephant grass is a forage crop plant native to Africa of great socio-economic and environmental importance; it can be used for animal feed and for bioenergy production. Understanding the genetic variability of elephant grass is essential for breeding programs. In this context, we examined the genetic divergence of elephant grass accessions using the Gower algorithm. The experiment was conducted under field conditions in the municipality of Campos dos Goytacazes-RJ, Brazil. All 85 elephant grass accessions belonging to the Active Elephant Grass Germplasm Bank of Embrapa Gado de Leite were included. These genotypes are commercial varieties from various countries. They were evaluated for morphoagronomic, morphological and phenological characteristics. The experimental design was randomized blocks with two repetitions. The plots were composed of 5.5-meter rows, with 2.0-meter spacing between the planting rows, totaling 11.0 m2 . The useful area was a sample in the center of the plot. We generated an illustrative dendrogram, obtained by the UPGMA method and the Tocher clustering, based on the Gower algorithm. Data were examined by means of the GENES statistical programs and the R program. According to the dissimilarity matrices based on the Gower algorithm, the genetic distances varied between 0.08 and 0.56, and the mean distance of the 85 evaluated accessions was 0.25, suggesting, consequently, that there is wide genetic variability between the accessions. Of the 85 genotypes, seven presented genetic distances smaller than 0.1, being indicative of duplicates in the germplasm bank, which could be eliminated without risk of loss of genetic variability.
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spelling Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.Cenchrus purpureusClustering analysisAnálise de agrupamentoDiversidade genéticaGermoplasmaCapim ElefanteVariação GenéticaMultivariate analysisGermplasmManagement of variability in germplasm banks is essential for genetic improvement, so that the breeder can estimate the genetic similarity between cultivars, as well as maintain genetic diversity in breeding programs. Elephant grass is a forage crop plant native to Africa of great socio-economic and environmental importance; it can be used for animal feed and for bioenergy production. Understanding the genetic variability of elephant grass is essential for breeding programs. In this context, we examined the genetic divergence of elephant grass accessions using the Gower algorithm. The experiment was conducted under field conditions in the municipality of Campos dos Goytacazes-RJ, Brazil. All 85 elephant grass accessions belonging to the Active Elephant Grass Germplasm Bank of Embrapa Gado de Leite were included. These genotypes are commercial varieties from various countries. They were evaluated for morphoagronomic, morphological and phenological characteristics. The experimental design was randomized blocks with two repetitions. The plots were composed of 5.5-meter rows, with 2.0-meter spacing between the planting rows, totaling 11.0 m2 . The useful area was a sample in the center of the plot. We generated an illustrative dendrogram, obtained by the UPGMA method and the Tocher clustering, based on the Gower algorithm. Data were examined by means of the GENES statistical programs and the R program. According to the dissimilarity matrices based on the Gower algorithm, the genetic distances varied between 0.08 and 0.56, and the mean distance of the 85 evaluated accessions was 0.25, suggesting, consequently, that there is wide genetic variability between the accessions. Of the 85 genotypes, seven presented genetic distances smaller than 0.1, being indicative of duplicates in the germplasm bank, which could be eliminated without risk of loss of genetic variability.Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Federal Rural do Rio de Janeiro; ANTONIO VANDER PEREIRA, CNPGL; Universidade Estadual do Norte Fluminense Darcy Ribeiro; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro.VIDAL, A. K. F.DAHER, R. F.ANDRADE, E. K. V. deFREITAS, R. S.STIDA, W. F.AMARAL JÚNIOR, A. T. doMENEZES, B. R. da S.PEREIRA, A. V.SILVA, V. B. daTARDIN, F. D.OLIVEIRA, L. J. da S. de2021-12-21T17:00:23Z2021-12-21T17:00:23Z2021-12-172021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 20, n. 4, gmr18944, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1138016http://dx.doi.org/10.4238/gmr18944enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2021-12-21T17:00:30Zoai:www.alice.cnptia.embrapa.br:doc/1138016Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542021-12-21T17:00:30falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542021-12-21T17:00:30Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
title Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
spellingShingle Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
VIDAL, A. K. F.
Cenchrus purpureus
Clustering analysis
Análise de agrupamento
Diversidade genética
Germoplasma
Capim Elefante
Variação Genética
Multivariate analysis
Germplasm
title_short Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
title_full Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
title_fullStr Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
title_full_unstemmed Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
title_sort Estimate of genetic diversity in germplasm of elephant grass accessions in Brazil using the Gower algorithm.
author VIDAL, A. K. F.
author_facet VIDAL, A. K. F.
DAHER, R. F.
ANDRADE, E. K. V. de
FREITAS, R. S.
STIDA, W. F.
AMARAL JÚNIOR, A. T. do
MENEZES, B. R. da S.
PEREIRA, A. V.
SILVA, V. B. da
TARDIN, F. D.
OLIVEIRA, L. J. da S. de
author_role author
author2 DAHER, R. F.
ANDRADE, E. K. V. de
FREITAS, R. S.
STIDA, W. F.
AMARAL JÚNIOR, A. T. do
MENEZES, B. R. da S.
PEREIRA, A. V.
SILVA, V. B. da
TARDIN, F. D.
OLIVEIRA, L. J. da S. de
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Federal Rural do Rio de Janeiro; ANTONIO VANDER PEREIRA, CNPGL; Universidade Estadual do Norte Fluminense Darcy Ribeiro; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro.
dc.contributor.author.fl_str_mv VIDAL, A. K. F.
DAHER, R. F.
ANDRADE, E. K. V. de
FREITAS, R. S.
STIDA, W. F.
AMARAL JÚNIOR, A. T. do
MENEZES, B. R. da S.
PEREIRA, A. V.
SILVA, V. B. da
TARDIN, F. D.
OLIVEIRA, L. J. da S. de
dc.subject.por.fl_str_mv Cenchrus purpureus
Clustering analysis
Análise de agrupamento
Diversidade genética
Germoplasma
Capim Elefante
Variação Genética
Multivariate analysis
Germplasm
topic Cenchrus purpureus
Clustering analysis
Análise de agrupamento
Diversidade genética
Germoplasma
Capim Elefante
Variação Genética
Multivariate analysis
Germplasm
description Management of variability in germplasm banks is essential for genetic improvement, so that the breeder can estimate the genetic similarity between cultivars, as well as maintain genetic diversity in breeding programs. Elephant grass is a forage crop plant native to Africa of great socio-economic and environmental importance; it can be used for animal feed and for bioenergy production. Understanding the genetic variability of elephant grass is essential for breeding programs. In this context, we examined the genetic divergence of elephant grass accessions using the Gower algorithm. The experiment was conducted under field conditions in the municipality of Campos dos Goytacazes-RJ, Brazil. All 85 elephant grass accessions belonging to the Active Elephant Grass Germplasm Bank of Embrapa Gado de Leite were included. These genotypes are commercial varieties from various countries. They were evaluated for morphoagronomic, morphological and phenological characteristics. The experimental design was randomized blocks with two repetitions. The plots were composed of 5.5-meter rows, with 2.0-meter spacing between the planting rows, totaling 11.0 m2 . The useful area was a sample in the center of the plot. We generated an illustrative dendrogram, obtained by the UPGMA method and the Tocher clustering, based on the Gower algorithm. Data were examined by means of the GENES statistical programs and the R program. According to the dissimilarity matrices based on the Gower algorithm, the genetic distances varied between 0.08 and 0.56, and the mean distance of the 85 evaluated accessions was 0.25, suggesting, consequently, that there is wide genetic variability between the accessions. Of the 85 genotypes, seven presented genetic distances smaller than 0.1, being indicative of duplicates in the germplasm bank, which could be eliminated without risk of loss of genetic variability.
publishDate 2021
dc.date.none.fl_str_mv 2021-12-21T17:00:23Z
2021-12-21T17:00:23Z
2021-12-17
2021
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 20, n. 4, gmr18944, 2021.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1138016
http://dx.doi.org/10.4238/gmr18944
identifier_str_mv Genetics and Molecular Research, v. 20, n. 4, gmr18944, 2021.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1138016
http://dx.doi.org/10.4238/gmr18944
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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