Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.

Detalhes bibliográficos
Autor(a) principal: BRASILEIRO, A. C. M.
Data de Publicação: 2015
Outros Autores: MORGANTE, C. V., ARAUJO, A. C. G., LEAL-BERTIOLI, S. C. M., SILVA, A. K., MARTINS, A. C. Q., VINSON, C. C., SANTOS, C. M. R., BONFIM, O., TOGAWA, R. C., SARAIVA, M. A. P., BERTIOLI, D. J., GUIMARAES, P. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035448
Resumo: Peanut (Arachis hypogaeaL.) is an important le-gume cultivated mostly in drought-prone areas where its pro-ductivity can be limited by water scarcity. The development of more drought-tolerant varieties is, therefore, a priority for pea-nut breeding programs worldwide. In contrast to cultivated peanut, wild relatives have a broader genetic diversity and constitute a rich source of resistance/tolerance alleles to biotic and abiotic stresses. The present study takes advantage of this diversity to identify drought-responsive genes by analyzing the expression profile of two wild species, Arachis duranensis and Arachis magna (AA and BB genomes, respectively), in response to progressive water deficit in soil. Data analysi from leaves and roots of A. duranensis (454 sequencing) and A. magna (suppression subtractive hybridization (SSH)) stressed and control complementary DNA (cDNA) libraries revealed several differentially expressed genes in silico, and 44 of them were selected for further validation by quantitative RT-PCR (qRT-PCR). This allowed the identification of drought-responsive candidate genes, such as Expansin, Nitrilase, NAC ,and bZIP transcription factors, displaying sig-nificant levels of differential expression during stress imposition in both species. This is the first report on identification of differentially expressed genes under drought stress and recov-ery in wild Arachis species. The generated transcriptome data.besides being a valuable resource for gene discovery, will allow the characterization of new alleles and development of molecular markers associated with drought responses in pea-nut. These together constitute important tools for the peanut breeding program and also contribute to a better comprehen-sion of gene modulation in response to water deficit and rehydration.
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spelling Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.Gene toleranteCultura resistente a seca454 SequencingDifferential gene expressionDry-downPeanut wild relativesQRT-PCRSSHlibrariesBiologia molecularAmendoimResistência a SecaPeanut (Arachis hypogaeaL.) is an important le-gume cultivated mostly in drought-prone areas where its pro-ductivity can be limited by water scarcity. The development of more drought-tolerant varieties is, therefore, a priority for pea-nut breeding programs worldwide. In contrast to cultivated peanut, wild relatives have a broader genetic diversity and constitute a rich source of resistance/tolerance alleles to biotic and abiotic stresses. The present study takes advantage of this diversity to identify drought-responsive genes by analyzing the expression profile of two wild species, Arachis duranensis and Arachis magna (AA and BB genomes, respectively), in response to progressive water deficit in soil. Data analysi from leaves and roots of A. duranensis (454 sequencing) and A. magna (suppression subtractive hybridization (SSH)) stressed and control complementary DNA (cDNA) libraries revealed several differentially expressed genes in silico, and 44 of them were selected for further validation by quantitative RT-PCR (qRT-PCR). This allowed the identification of drought-responsive candidate genes, such as Expansin, Nitrilase, NAC ,and bZIP transcription factors, displaying sig-nificant levels of differential expression during stress imposition in both species. This is the first report on identification of differentially expressed genes under drought stress and recov-ery in wild Arachis species. The generated transcriptome data.besides being a valuable resource for gene discovery, will allow the characterization of new alleles and development of molecular markers associated with drought responses in pea-nut. These together constitute important tools for the peanut breeding program and also contribute to a better comprehen-sion of gene modulation in response to water deficit and rehydration.ANA CRISTINA MIRANDA BRASILEIRO, CENARGEN; CAROLINA VIANNA MORGANTE, CPATSA; ANA CLAUDIA GUERRA DE ARAUJO, CENARGEN; SORAYA CRISTINA DE M LEAL BERTIOLI, CENARGEN; AMANDA K. SILVA, bolsista, CENARGEN; ANDRESSA C. Q. MARTINS, bolsista, CENARGEN; CHRISTINA C. VINSON, bolsista, CENARGEN; CANDICE M. R. SANTOS, CONAB; ORZENIL BONFIM DA SILVA JUNIOR, CENARGEN; ROBERTO COITI TOGAWA, CENARGEN; MARIO ALFREDO DE PASSOS SARAIVA, CENARGEN; DAVID J. BERTIOLI, UNB; PATRICIA MESSEMBERG GUIMARAES, CENARGEN.BRASILEIRO, A. C. M.MORGANTE, C. V.ARAUJO, A. C. G.LEAL-BERTIOLI, S. C. M.SILVA, A. K.MARTINS, A. C. Q.VINSON, C. C.SANTOS, C. M. R.BONFIM, O.TOGAWA, R. C.SARAIVA, M. A. P.BERTIOLI, D. J.GUIMARAES, P. M.2016-01-28T11:11:11Z2016-01-28T11:11:11Z2016-01-2820152016-01-28T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlant Molecular Biology Reporter, v. 33, p. 1876-1892, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/103544810.1007/s11105-015-0882-xenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:37:30Zoai:www.alice.cnptia.embrapa.br:doc/1035448Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:37:30falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:37:30Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
title Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
spellingShingle Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
BRASILEIRO, A. C. M.
Gene tolerante
Cultura resistente a seca
454 Sequencing
Differential gene expression
Dry-down
Peanut wild relatives
QRT-PCR
SSHlibraries
Biologia molecular
Amendoim
Resistência a Seca
title_short Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
title_full Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
title_fullStr Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
title_full_unstemmed Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
title_sort Transcriptome profiling of wild Arachis from water-limited environments uncovers drought tolerance candidate genes.
author BRASILEIRO, A. C. M.
author_facet BRASILEIRO, A. C. M.
MORGANTE, C. V.
ARAUJO, A. C. G.
LEAL-BERTIOLI, S. C. M.
SILVA, A. K.
MARTINS, A. C. Q.
VINSON, C. C.
SANTOS, C. M. R.
BONFIM, O.
TOGAWA, R. C.
SARAIVA, M. A. P.
BERTIOLI, D. J.
GUIMARAES, P. M.
author_role author
author2 MORGANTE, C. V.
ARAUJO, A. C. G.
LEAL-BERTIOLI, S. C. M.
SILVA, A. K.
MARTINS, A. C. Q.
VINSON, C. C.
SANTOS, C. M. R.
BONFIM, O.
TOGAWA, R. C.
SARAIVA, M. A. P.
BERTIOLI, D. J.
GUIMARAES, P. M.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ANA CRISTINA MIRANDA BRASILEIRO, CENARGEN; CAROLINA VIANNA MORGANTE, CPATSA; ANA CLAUDIA GUERRA DE ARAUJO, CENARGEN; SORAYA CRISTINA DE M LEAL BERTIOLI, CENARGEN; AMANDA K. SILVA, bolsista, CENARGEN; ANDRESSA C. Q. MARTINS, bolsista, CENARGEN; CHRISTINA C. VINSON, bolsista, CENARGEN; CANDICE M. R. SANTOS, CONAB; ORZENIL BONFIM DA SILVA JUNIOR, CENARGEN; ROBERTO COITI TOGAWA, CENARGEN; MARIO ALFREDO DE PASSOS SARAIVA, CENARGEN; DAVID J. BERTIOLI, UNB; PATRICIA MESSEMBERG GUIMARAES, CENARGEN.
dc.contributor.author.fl_str_mv BRASILEIRO, A. C. M.
MORGANTE, C. V.
ARAUJO, A. C. G.
LEAL-BERTIOLI, S. C. M.
SILVA, A. K.
MARTINS, A. C. Q.
VINSON, C. C.
SANTOS, C. M. R.
BONFIM, O.
TOGAWA, R. C.
SARAIVA, M. A. P.
BERTIOLI, D. J.
GUIMARAES, P. M.
dc.subject.por.fl_str_mv Gene tolerante
Cultura resistente a seca
454 Sequencing
Differential gene expression
Dry-down
Peanut wild relatives
QRT-PCR
SSHlibraries
Biologia molecular
Amendoim
Resistência a Seca
topic Gene tolerante
Cultura resistente a seca
454 Sequencing
Differential gene expression
Dry-down
Peanut wild relatives
QRT-PCR
SSHlibraries
Biologia molecular
Amendoim
Resistência a Seca
description Peanut (Arachis hypogaeaL.) is an important le-gume cultivated mostly in drought-prone areas where its pro-ductivity can be limited by water scarcity. The development of more drought-tolerant varieties is, therefore, a priority for pea-nut breeding programs worldwide. In contrast to cultivated peanut, wild relatives have a broader genetic diversity and constitute a rich source of resistance/tolerance alleles to biotic and abiotic stresses. The present study takes advantage of this diversity to identify drought-responsive genes by analyzing the expression profile of two wild species, Arachis duranensis and Arachis magna (AA and BB genomes, respectively), in response to progressive water deficit in soil. Data analysi from leaves and roots of A. duranensis (454 sequencing) and A. magna (suppression subtractive hybridization (SSH)) stressed and control complementary DNA (cDNA) libraries revealed several differentially expressed genes in silico, and 44 of them were selected for further validation by quantitative RT-PCR (qRT-PCR). This allowed the identification of drought-responsive candidate genes, such as Expansin, Nitrilase, NAC ,and bZIP transcription factors, displaying sig-nificant levels of differential expression during stress imposition in both species. This is the first report on identification of differentially expressed genes under drought stress and recov-ery in wild Arachis species. The generated transcriptome data.besides being a valuable resource for gene discovery, will allow the characterization of new alleles and development of molecular markers associated with drought responses in pea-nut. These together constitute important tools for the peanut breeding program and also contribute to a better comprehen-sion of gene modulation in response to water deficit and rehydration.
publishDate 2015
dc.date.none.fl_str_mv 2015
2016-01-28T11:11:11Z
2016-01-28T11:11:11Z
2016-01-28
2016-01-28T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Plant Molecular Biology Reporter, v. 33, p. 1876-1892, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035448
10.1007/s11105-015-0882-x
identifier_str_mv Plant Molecular Biology Reporter, v. 33, p. 1876-1892, 2015.
10.1007/s11105-015-0882-x
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035448
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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