Genetic diversity and heterotic grouping of sorghum lines using SNP markers.

Detalhes bibliográficos
Autor(a) principal: SILVA, K. J. da
Data de Publicação: 2020
Outros Autores: PASTINA, M. M., GUIMARÃES, C. T., MAGALHAES, J. V. de, PIMENTEL, L. D., SCHAFFERT, R. E., PINTO, M. de O., SOUZA, V. F. de, BERNARDINO, K. da C., SILVA, M. J. da, BORÉM, A., MENEZES, C. B. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125751
http://doi.org/10.1590/1678-992X-2020-0039
Resumo: Sorghum breeding programs are based predominantly on developing homozygous lines to produce single cross hybrids, frequently with relatively narrow genetic bases. The adoption of complementary strategies, such as genetic diversity study, enables a broader vision of the genetic structure of the breeding germplasm. The purpose of this study was to evaluate the genetic diversity of sorghum breeding lines using structure analysis, principal components (PC) and clustering analyses. A total of 160 sorghum lines were genotyped with 29,649 SNP markers generated by genotyping-by-sequencing (GBS). The PC and clustering analyses consistently divided the R (restorer) and B (maintainer) lines based on their pedigree, generating four groups. Thirty-two B and 21 R lines were used to generate 121 single-cross hybrids, whose performances were compared based on the diversity clustering of each parental line. The genetic divergence of B and R lines indicated a potential for increasing heterotic response in the development of hybrids. The genetic distance was correlated to heterosis, allowing for the use of markers to create heterotic groups in sorghum.
id EMBR_d9bc51bd5a89d6e8cdd55959817c3f3d
oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/1125751
network_acronym_str EMBR
network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository_id_str 2154
spelling Genetic diversity and heterotic grouping of sorghum lines using SNP markers.HeteroseDiversidade genéticaSorghum BicolorMarcador GenéticoMelhoramento Genético VegetalSorghum breeding programs are based predominantly on developing homozygous lines to produce single cross hybrids, frequently with relatively narrow genetic bases. The adoption of complementary strategies, such as genetic diversity study, enables a broader vision of the genetic structure of the breeding germplasm. The purpose of this study was to evaluate the genetic diversity of sorghum breeding lines using structure analysis, principal components (PC) and clustering analyses. A total of 160 sorghum lines were genotyped with 29,649 SNP markers generated by genotyping-by-sequencing (GBS). The PC and clustering analyses consistently divided the R (restorer) and B (maintainer) lines based on their pedigree, generating four groups. Thirty-two B and 21 R lines were used to generate 121 single-cross hybrids, whose performances were compared based on the diversity clustering of each parental line. The genetic divergence of B and R lines indicated a potential for increasing heterotic response in the development of hybrids. The genetic distance was correlated to heterosis, allowing for the use of markers to create heterotic groups in sorghum.Karla Jorge da Silva, Universidade Federal de Viçosa; MARIA MARTA PASTINA, CNPMS; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS; Leonardo Duarte Pimentel, Universidade Federal de Viçosa; ROBERT EUGENE SCHAFFERT, CNPMS; MARCOS DE OLIVEIRA PINTO, CNPMS; Vander Fillipe de Souza, FT Sementes; Karine da Costa Bernardino, Universidade Federal de Viçosa; Michele Jorge da Silva, Universidade Federal de Viçosa; Aluízio Borém, Universidade Federal de Viçosa; CICERO BESERRA DE MENEZES, CNPMS.SILVA, K. J. daPASTINA, M. M.GUIMARÃES, C. T.MAGALHAES, J. V. dePIMENTEL, L. D.SCHAFFERT, R. E.PINTO, M. de O.SOUZA, V. F. deBERNARDINO, K. da C.SILVA, M. J. daBORÉM, A.MENEZES, C. B. de2020-10-23T09:12:22Z2020-10-23T09:12:22Z2020-10-222021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleScientia Agricola, v. 78, n. 6, e20200039, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125751http://doi.org/10.1590/1678-992X-2020-0039enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-10-23T09:12:29Zoai:www.alice.cnptia.embrapa.br:doc/1125751Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-10-23T09:12:29falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-10-23T09:12:29Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
title Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
spellingShingle Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
SILVA, K. J. da
Heterose
Diversidade genética
Sorghum Bicolor
Marcador Genético
Melhoramento Genético Vegetal
title_short Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
title_full Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
title_fullStr Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
title_full_unstemmed Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
title_sort Genetic diversity and heterotic grouping of sorghum lines using SNP markers.
author SILVA, K. J. da
author_facet SILVA, K. J. da
PASTINA, M. M.
GUIMARÃES, C. T.
MAGALHAES, J. V. de
PIMENTEL, L. D.
SCHAFFERT, R. E.
PINTO, M. de O.
SOUZA, V. F. de
BERNARDINO, K. da C.
SILVA, M. J. da
BORÉM, A.
MENEZES, C. B. de
author_role author
author2 PASTINA, M. M.
GUIMARÃES, C. T.
MAGALHAES, J. V. de
PIMENTEL, L. D.
SCHAFFERT, R. E.
PINTO, M. de O.
SOUZA, V. F. de
BERNARDINO, K. da C.
SILVA, M. J. da
BORÉM, A.
MENEZES, C. B. de
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Karla Jorge da Silva, Universidade Federal de Viçosa; MARIA MARTA PASTINA, CNPMS; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS; Leonardo Duarte Pimentel, Universidade Federal de Viçosa; ROBERT EUGENE SCHAFFERT, CNPMS; MARCOS DE OLIVEIRA PINTO, CNPMS; Vander Fillipe de Souza, FT Sementes; Karine da Costa Bernardino, Universidade Federal de Viçosa; Michele Jorge da Silva, Universidade Federal de Viçosa; Aluízio Borém, Universidade Federal de Viçosa; CICERO BESERRA DE MENEZES, CNPMS.
dc.contributor.author.fl_str_mv SILVA, K. J. da
PASTINA, M. M.
GUIMARÃES, C. T.
MAGALHAES, J. V. de
PIMENTEL, L. D.
SCHAFFERT, R. E.
PINTO, M. de O.
SOUZA, V. F. de
BERNARDINO, K. da C.
SILVA, M. J. da
BORÉM, A.
MENEZES, C. B. de
dc.subject.por.fl_str_mv Heterose
Diversidade genética
Sorghum Bicolor
Marcador Genético
Melhoramento Genético Vegetal
topic Heterose
Diversidade genética
Sorghum Bicolor
Marcador Genético
Melhoramento Genético Vegetal
description Sorghum breeding programs are based predominantly on developing homozygous lines to produce single cross hybrids, frequently with relatively narrow genetic bases. The adoption of complementary strategies, such as genetic diversity study, enables a broader vision of the genetic structure of the breeding germplasm. The purpose of this study was to evaluate the genetic diversity of sorghum breeding lines using structure analysis, principal components (PC) and clustering analyses. A total of 160 sorghum lines were genotyped with 29,649 SNP markers generated by genotyping-by-sequencing (GBS). The PC and clustering analyses consistently divided the R (restorer) and B (maintainer) lines based on their pedigree, generating four groups. Thirty-two B and 21 R lines were used to generate 121 single-cross hybrids, whose performances were compared based on the diversity clustering of each parental line. The genetic divergence of B and R lines indicated a potential for increasing heterotic response in the development of hybrids. The genetic distance was correlated to heterosis, allowing for the use of markers to create heterotic groups in sorghum.
publishDate 2020
dc.date.none.fl_str_mv 2020-10-23T09:12:22Z
2020-10-23T09:12:22Z
2020-10-22
2021
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Scientia Agricola, v. 78, n. 6, e20200039, 2021.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125751
http://doi.org/10.1590/1678-992X-2020-0039
identifier_str_mv Scientia Agricola, v. 78, n. 6, e20200039, 2021.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125751
http://doi.org/10.1590/1678-992X-2020-0039
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503496557395968