The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.

Detalhes bibliográficos
Autor(a) principal: CHEN, W.
Data de Publicação: 2016
Outros Autores: HASEGAWA, D. K., KAUR, N., KLIOT, A., PINHEIRO, P. V., LUAN, J., STENSMYR, M. C., ZHENG, Y., LIU, W., SUN, H., XU, Y., LUO, Y., KRUSE, A., YANG, X., KONTSEDALOV, S., LEBEDEV, G., FISHER, T. W., NELSON, D. R., HUNTER, W. B., BROWN, J. K., JANDER, G., CILIA, M., DOUGLAS, A. E., GHANIM, M., SIMMONS, A. M., WINTERMANTEL, W. M., LING, K.-S., FEI, Z.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058708
Resumo: Background: The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is among the 100 worst invasive species in the world. As one of the most important crop pests and virus vectors, B. tabaci causes substantial crop losses and poses a serious threat to global food security. Results: We report the 615-Mb high-quality genome sequence of B. tabaci Middle East-Asia Minor 1 (MEAM1), the first genome sequence in the Aleyrodidae family, which contains 15,664 protein-coding genes. The B. tabaci genome is highly divergent from other sequenced hemipteran genomes, sharing no detectable synteny. A number of known detoxification gene families, including cytochrome P450s and UDP-glucuronosyltransferases, are significantly expanded in B. tabaci. Other expanded gene families, including cathepsins, large clusters of tandemly duplicated B. tabaci-specific genes, and phosphatidylethanolamine-binding proteins (PEBPs), were found to be associated with virus acquisition and transmission and/or insecticide resistance, likely contributing to the global invasiveness and efficient virus transmission capacity of B. tabaci. The presence of 142 horizontally transferred genes from bacteria or fungi in the B. tabaci genome, including genes encoding hopanoid/sterol synthesis and xenobiotic detoxification enzymes that are not present in other insects, offers novel insights into the unique biological adaptations of this insect such as polyphagy and insecticide resistance. Interestingly, two adjacent bacterial pantothenate biosynthesis genes, panB and panC, have been co-transferred into B. tabaci and fused into a single gene that has acquired introns during its evolution. Conclusions: The B. tabaci genome contains numerous genetic novelties, including expansions in gene families associated with insecticide resistance, detoxification and virus transmission, as well as numerous horizontally transferred genes from bacteria and fungi. We believe these novelties likely have shaped B. tabaci as a highly invasive polyphagous crop pest and efficient vector of plant viruses. The genome serves as a reference for resolving the B. tabaci cryptic species complex, understanding fundamental biological novelties, and providing valuable genetic information to assist the development of novel strategies for controlling whiteflies and the viruses they transmit.
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spelling The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.PolyphagyWhiteflyDraft genomeBemisia tabaciMosca brancaPraga de plantaPlant pestsVirus transmissionInsecticide resistanceBackground: The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is among the 100 worst invasive species in the world. As one of the most important crop pests and virus vectors, B. tabaci causes substantial crop losses and poses a serious threat to global food security. Results: We report the 615-Mb high-quality genome sequence of B. tabaci Middle East-Asia Minor 1 (MEAM1), the first genome sequence in the Aleyrodidae family, which contains 15,664 protein-coding genes. The B. tabaci genome is highly divergent from other sequenced hemipteran genomes, sharing no detectable synteny. A number of known detoxification gene families, including cytochrome P450s and UDP-glucuronosyltransferases, are significantly expanded in B. tabaci. Other expanded gene families, including cathepsins, large clusters of tandemly duplicated B. tabaci-specific genes, and phosphatidylethanolamine-binding proteins (PEBPs), were found to be associated with virus acquisition and transmission and/or insecticide resistance, likely contributing to the global invasiveness and efficient virus transmission capacity of B. tabaci. The presence of 142 horizontally transferred genes from bacteria or fungi in the B. tabaci genome, including genes encoding hopanoid/sterol synthesis and xenobiotic detoxification enzymes that are not present in other insects, offers novel insights into the unique biological adaptations of this insect such as polyphagy and insecticide resistance. Interestingly, two adjacent bacterial pantothenate biosynthesis genes, panB and panC, have been co-transferred into B. tabaci and fused into a single gene that has acquired introns during its evolution. Conclusions: The B. tabaci genome contains numerous genetic novelties, including expansions in gene families associated with insecticide resistance, detoxification and virus transmission, as well as numerous horizontally transferred genes from bacteria and fungi. We believe these novelties likely have shaped B. tabaci as a highly invasive polyphagous crop pest and efficient vector of plant viruses. The genome serves as a reference for resolving the B. tabaci cryptic species complex, understanding fundamental biological novelties, and providing valuable genetic information to assist the development of novel strategies for controlling whiteflies and the viruses they transmit.WENBO CHEN; DANIEL K. HASEGAWA; NAVNEET KAUR; ADI KLIOT; PATRICIA VALLE PINHEIRO, CNPAF; JUNBO LUAN; M. C. STENSMYR; YI ZHENG; WENLI LIU; HONGHE SUN; YIMIN XU; YUAN LUO; ANGELA KRUSE; XIAOWEI YANG; SVETLANA KONTSEDALOV; GALINA LEBEDEV; TONJA W. FISHER; DAVID R. NELSON; WAYNE B. HUNTER; JUDITH K. BROWN; GEORG JANDER; MICHELLE CILIA; ANGELA E. DOUGLAS; MURAD GHANIM; ALVIN M. SIMMONS; WILLIAM M. WINTERMANTEL; KAI-SHU LING; ZHANGJUN FEI.CHEN, W.HASEGAWA, D. K.KAUR, N.KLIOT, A.PINHEIRO, P. V.LUAN, J.STENSMYR, M. C.ZHENG, Y.LIU, W.SUN, H.XU, Y.LUO, Y.KRUSE, A.YANG, X.KONTSEDALOV, S.LEBEDEV, G.FISHER, T. W.NELSON, D. R.HUNTER, W. B.BROWN, J. K.JANDER, G.CILIA, M.DOUGLAS, A. E.GHANIM, M.SIMMONS, A. M.WINTERMANTEL, W. M.LING, K.-S.FEI, Z.2016-12-15T11:11:11Z2016-12-15T11:11:11Z2016-12-1520162016-12-15T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBMC Biology, v. 14, p. 1-15, 2016.http://www.alice.cnptia.embrapa.br/alice/handle/doc/105870810.1186/s12915-016-0321-yenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:55:26Zoai:www.alice.cnptia.embrapa.br:doc/1058708Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:55:26falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:55:26Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
title The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
spellingShingle The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
CHEN, W.
Polyphagy
Whitefly
Draft genome
Bemisia tabaci
Mosca branca
Praga de planta
Plant pests
Virus transmission
Insecticide resistance
title_short The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
title_full The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
title_fullStr The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
title_full_unstemmed The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
title_sort The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
author CHEN, W.
author_facet CHEN, W.
HASEGAWA, D. K.
KAUR, N.
KLIOT, A.
PINHEIRO, P. V.
LUAN, J.
STENSMYR, M. C.
ZHENG, Y.
LIU, W.
SUN, H.
XU, Y.
LUO, Y.
KRUSE, A.
YANG, X.
KONTSEDALOV, S.
LEBEDEV, G.
FISHER, T. W.
NELSON, D. R.
HUNTER, W. B.
BROWN, J. K.
JANDER, G.
CILIA, M.
DOUGLAS, A. E.
GHANIM, M.
SIMMONS, A. M.
WINTERMANTEL, W. M.
LING, K.-S.
FEI, Z.
author_role author
author2 HASEGAWA, D. K.
KAUR, N.
KLIOT, A.
PINHEIRO, P. V.
LUAN, J.
STENSMYR, M. C.
ZHENG, Y.
LIU, W.
SUN, H.
XU, Y.
LUO, Y.
KRUSE, A.
YANG, X.
KONTSEDALOV, S.
LEBEDEV, G.
FISHER, T. W.
NELSON, D. R.
HUNTER, W. B.
BROWN, J. K.
JANDER, G.
CILIA, M.
DOUGLAS, A. E.
GHANIM, M.
SIMMONS, A. M.
WINTERMANTEL, W. M.
LING, K.-S.
FEI, Z.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv WENBO CHEN; DANIEL K. HASEGAWA; NAVNEET KAUR; ADI KLIOT; PATRICIA VALLE PINHEIRO, CNPAF; JUNBO LUAN; M. C. STENSMYR; YI ZHENG; WENLI LIU; HONGHE SUN; YIMIN XU; YUAN LUO; ANGELA KRUSE; XIAOWEI YANG; SVETLANA KONTSEDALOV; GALINA LEBEDEV; TONJA W. FISHER; DAVID R. NELSON; WAYNE B. HUNTER; JUDITH K. BROWN; GEORG JANDER; MICHELLE CILIA; ANGELA E. DOUGLAS; MURAD GHANIM; ALVIN M. SIMMONS; WILLIAM M. WINTERMANTEL; KAI-SHU LING; ZHANGJUN FEI.
dc.contributor.author.fl_str_mv CHEN, W.
HASEGAWA, D. K.
KAUR, N.
KLIOT, A.
PINHEIRO, P. V.
LUAN, J.
STENSMYR, M. C.
ZHENG, Y.
LIU, W.
SUN, H.
XU, Y.
LUO, Y.
KRUSE, A.
YANG, X.
KONTSEDALOV, S.
LEBEDEV, G.
FISHER, T. W.
NELSON, D. R.
HUNTER, W. B.
BROWN, J. K.
JANDER, G.
CILIA, M.
DOUGLAS, A. E.
GHANIM, M.
SIMMONS, A. M.
WINTERMANTEL, W. M.
LING, K.-S.
FEI, Z.
dc.subject.por.fl_str_mv Polyphagy
Whitefly
Draft genome
Bemisia tabaci
Mosca branca
Praga de planta
Plant pests
Virus transmission
Insecticide resistance
topic Polyphagy
Whitefly
Draft genome
Bemisia tabaci
Mosca branca
Praga de planta
Plant pests
Virus transmission
Insecticide resistance
description Background: The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is among the 100 worst invasive species in the world. As one of the most important crop pests and virus vectors, B. tabaci causes substantial crop losses and poses a serious threat to global food security. Results: We report the 615-Mb high-quality genome sequence of B. tabaci Middle East-Asia Minor 1 (MEAM1), the first genome sequence in the Aleyrodidae family, which contains 15,664 protein-coding genes. The B. tabaci genome is highly divergent from other sequenced hemipteran genomes, sharing no detectable synteny. A number of known detoxification gene families, including cytochrome P450s and UDP-glucuronosyltransferases, are significantly expanded in B. tabaci. Other expanded gene families, including cathepsins, large clusters of tandemly duplicated B. tabaci-specific genes, and phosphatidylethanolamine-binding proteins (PEBPs), were found to be associated with virus acquisition and transmission and/or insecticide resistance, likely contributing to the global invasiveness and efficient virus transmission capacity of B. tabaci. The presence of 142 horizontally transferred genes from bacteria or fungi in the B. tabaci genome, including genes encoding hopanoid/sterol synthesis and xenobiotic detoxification enzymes that are not present in other insects, offers novel insights into the unique biological adaptations of this insect such as polyphagy and insecticide resistance. Interestingly, two adjacent bacterial pantothenate biosynthesis genes, panB and panC, have been co-transferred into B. tabaci and fused into a single gene that has acquired introns during its evolution. Conclusions: The B. tabaci genome contains numerous genetic novelties, including expansions in gene families associated with insecticide resistance, detoxification and virus transmission, as well as numerous horizontally transferred genes from bacteria and fungi. We believe these novelties likely have shaped B. tabaci as a highly invasive polyphagous crop pest and efficient vector of plant viruses. The genome serves as a reference for resolving the B. tabaci cryptic species complex, understanding fundamental biological novelties, and providing valuable genetic information to assist the development of novel strategies for controlling whiteflies and the viruses they transmit.
publishDate 2016
dc.date.none.fl_str_mv 2016-12-15T11:11:11Z
2016-12-15T11:11:11Z
2016-12-15
2016
2016-12-15T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv BMC Biology, v. 14, p. 1-15, 2016.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058708
10.1186/s12915-016-0321-y
identifier_str_mv BMC Biology, v. 14, p. 1-15, 2016.
10.1186/s12915-016-0321-y
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058708
dc.language.iso.fl_str_mv eng
language eng
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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