Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.

Detalhes bibliográficos
Autor(a) principal: BOSCHIERO, C.
Data de Publicação: 2018
Outros Autores: MOREIRA, G. C. M., GHEYAS, A., GODOY, T. F., GASPARIN, G., MARIANI, P. D. S. C., PADUAN, M., CESAR, A. S. M., LEDUR, M. C., COUTINHO, L. L.
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1091368
Resumo: Abstract: Background Meat and egg-type chickens have been selected for several generations for different traits. Artificial and natural selection for different phenotypes can change frequency of genetic variants, leaving particular genomic footprints throghtout the genome. Thus, the aims of this study were to sequence 28 chickens from two Brazilian lines (meat and white egg-type) and use this information to characterize genome-wide genetic variations, identify putative regions under selection using Fst method, and find putative pathways under selection.
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network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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spelling Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.Fat depositionGenetic variantsNext generation sequencingGenomaFrango de CorteLinhagemOvoMelhoramento Genético AnimalPolimorfismo GenéticoSingle nucleotide polymorphismEgg industryBroiler chickensGenomePoultry carcassesAbstract: Background Meat and egg-type chickens have been selected for several generations for different traits. Artificial and natural selection for different phenotypes can change frequency of genetic variants, leaving particular genomic footprints throghtout the genome. Thus, the aims of this study were to sequence 28 chickens from two Brazilian lines (meat and white egg-type) and use this information to characterize genome-wide genetic variations, identify putative regions under selection using Fst method, and find putative pathways under selection.CLARISSA BOSCHIERO, ESALQ; GABRIEL COSTA MONTEIRO MOREIRA, ESALQ; ALMAS GHEYAS, University of Edinburgh; THAÍS FERNANDA GODOY, ESALQ; GUSTAVO GASPARIN, ESALQ; PILAR DRUMMOND SAMPAIO CORRÊA MARIANI, ESALQ; MARCELA PADUAN, ESALQ; ALINE SILVA MELLO CESAR, ESALQ; MONICA CORREA LEDUR, CNPSA; LUIZ LEHMMAN COUTINHO, ESALQ.BOSCHIERO, C.MOREIRA, G. C. M.GHEYAS, A.GODOY, T. F.GASPARIN, G.MARIANI, P. D. S. C.PADUAN, M.CESAR, A. S. M.LEDUR, M. C.COUTINHO, L. L.2018-05-12T00:50:20Z2018-05-12T00:50:20Z2018-05-1120182018-08-22T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBMC Genomics, v. 19, n. 83, 2018.http://www.alice.cnptia.embrapa.br/alice/handle/doc/109136810.1186/s12864-018-4444-0porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2018-05-12T00:50:27Zoai:www.alice.cnptia.embrapa.br:doc/1091368Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542018-05-12T00:50:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542018-05-12T00:50:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
title Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
spellingShingle Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
BOSCHIERO, C.
Fat deposition
Genetic variants
Next generation sequencing
Genoma
Frango de Corte
Linhagem
Ovo
Melhoramento Genético Animal
Polimorfismo Genético
Single nucleotide polymorphism
Egg industry
Broiler chickens
Genome
Poultry carcasses
title_short Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
title_full Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
title_fullStr Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
title_full_unstemmed Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
title_sort Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.
author BOSCHIERO, C.
author_facet BOSCHIERO, C.
MOREIRA, G. C. M.
GHEYAS, A.
GODOY, T. F.
GASPARIN, G.
MARIANI, P. D. S. C.
PADUAN, M.
CESAR, A. S. M.
LEDUR, M. C.
COUTINHO, L. L.
author_role author
author2 MOREIRA, G. C. M.
GHEYAS, A.
GODOY, T. F.
GASPARIN, G.
MARIANI, P. D. S. C.
PADUAN, M.
CESAR, A. S. M.
LEDUR, M. C.
COUTINHO, L. L.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv CLARISSA BOSCHIERO, ESALQ; GABRIEL COSTA MONTEIRO MOREIRA, ESALQ; ALMAS GHEYAS, University of Edinburgh; THAÍS FERNANDA GODOY, ESALQ; GUSTAVO GASPARIN, ESALQ; PILAR DRUMMOND SAMPAIO CORRÊA MARIANI, ESALQ; MARCELA PADUAN, ESALQ; ALINE SILVA MELLO CESAR, ESALQ; MONICA CORREA LEDUR, CNPSA; LUIZ LEHMMAN COUTINHO, ESALQ.
dc.contributor.author.fl_str_mv BOSCHIERO, C.
MOREIRA, G. C. M.
GHEYAS, A.
GODOY, T. F.
GASPARIN, G.
MARIANI, P. D. S. C.
PADUAN, M.
CESAR, A. S. M.
LEDUR, M. C.
COUTINHO, L. L.
dc.subject.por.fl_str_mv Fat deposition
Genetic variants
Next generation sequencing
Genoma
Frango de Corte
Linhagem
Ovo
Melhoramento Genético Animal
Polimorfismo Genético
Single nucleotide polymorphism
Egg industry
Broiler chickens
Genome
Poultry carcasses
topic Fat deposition
Genetic variants
Next generation sequencing
Genoma
Frango de Corte
Linhagem
Ovo
Melhoramento Genético Animal
Polimorfismo Genético
Single nucleotide polymorphism
Egg industry
Broiler chickens
Genome
Poultry carcasses
description Abstract: Background Meat and egg-type chickens have been selected for several generations for different traits. Artificial and natural selection for different phenotypes can change frequency of genetic variants, leaving particular genomic footprints throghtout the genome. Thus, the aims of this study were to sequence 28 chickens from two Brazilian lines (meat and white egg-type) and use this information to characterize genome-wide genetic variations, identify putative regions under selection using Fst method, and find putative pathways under selection.
publishDate 2018
dc.date.none.fl_str_mv 2018-05-12T00:50:20Z
2018-05-12T00:50:20Z
2018-05-11
2018
2018-08-22T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv BMC Genomics, v. 19, n. 83, 2018.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1091368
10.1186/s12864-018-4444-0
identifier_str_mv BMC Genomics, v. 19, n. 83, 2018.
10.1186/s12864-018-4444-0
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1091368
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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