Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years

Detalhes bibliográficos
Autor(a) principal: Soares, Renata Oliveira
Data de Publicação: 2013
Outros Autores: Macedo, Maíra Bidart de, Groll, Andrea Von, Silva, Pedro Eduardo Almeida da
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FURG (RI FURG)
Texto Completo: http://repositorio.furg.br/handle/1/7024
http://dx.doi.org/10.1590/S1517-83822013000400032
Resumo: A sublineage of Mycobacterium tuberculosis called RDRio was described in 2007. Although only recently described, this strain may have been present previously in the population, and its identification in clinical isolates will elucidate bacterial transmission dynamics and host-pathogen interactions. This study evaluated the clonal diversity of the RDRio sublineage in clinical isolates from Rio Grande-RS obtained between 1998 and 2001. Among the 45 samples analyzed by the MIRU-VNTR method, there were six clusters with two samples each and 33 orphan strains with unique pattern. The strains were distributed across several different lineages including LAM (34.04%), X (14.89%), Haarlem (12.77%), UgandaI (10.64%), S (4.26%), NEW-1 (2.13%) and Cameroon (2.13%); 14.89% of the strains matched to multiple lineages. RDRio strains were present in 28.9% of the samples and 81.25% of the identified strains belonged to the LAM family. The high clonal diversity observed in this study is a constant feature in this region. The RDRio sublineage has been in Rio Grande-RS since 1998. The continued monitoring of RDRio in clinical isolates will enhance the understanding of its epidemiological significance.
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spelling Soares, Renata OliveiraMacedo, Maíra Bidart deGroll, Andrea VonSilva, Pedro Eduardo Almeida da2017-01-17T03:30:30Z2017-01-17T03:30:30Z2013SOARES, Renata Oliveira et al. Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years. Brazilian Journal of Microbiology, v. 44, n. 4, p. 1251-1255, 2013. Disponível em: <http://dx.doi.org/10.1590/S1517-83822013000400032 >. Acesso em: 16 jan. 2017.1678-4405http://repositorio.furg.br/handle/1/7024http://dx.doi.org/10.1590/S1517-83822013000400032A sublineage of Mycobacterium tuberculosis called RDRio was described in 2007. Although only recently described, this strain may have been present previously in the population, and its identification in clinical isolates will elucidate bacterial transmission dynamics and host-pathogen interactions. This study evaluated the clonal diversity of the RDRio sublineage in clinical isolates from Rio Grande-RS obtained between 1998 and 2001. Among the 45 samples analyzed by the MIRU-VNTR method, there were six clusters with two samples each and 33 orphan strains with unique pattern. The strains were distributed across several different lineages including LAM (34.04%), X (14.89%), Haarlem (12.77%), UgandaI (10.64%), S (4.26%), NEW-1 (2.13%) and Cameroon (2.13%); 14.89% of the strains matched to multiple lineages. RDRio strains were present in 28.9% of the samples and 81.25% of the identified strains belonged to the LAM family. The high clonal diversity observed in this study is a constant feature in this region. The RDRio sublineage has been in Rio Grande-RS since 1998. The continued monitoring of RDRio in clinical isolates will enhance the understanding of its epidemiological significance.engMycobacterium tuberculosisMIRU-VNTRRDRioMycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 yearsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FURG (RI FURG)instname:Universidade Federal do Rio Grande (FURG)instacron:FURGORIGINAL32.pdf32.pdfapplication/pdf726889https://repositorio.furg.br/bitstream/1/7024/1/32.pdf7615e9509042a6f36e91da79855396e9MD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.furg.br/bitstream/1/7024/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52open access1/70242019-11-13 23:02:08.775open accessoai:repositorio.furg.br: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Repositório InstitucionalPUBhttps://repositorio.furg.br/oai/request || http://200.19.254.174/oai/requestopendoar:2019-11-14T02:02:08Repositório Institucional da FURG (RI FURG) - Universidade Federal do Rio Grande (FURG)false
dc.title.pt_BR.fl_str_mv Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
title Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
spellingShingle Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
Soares, Renata Oliveira
Mycobacterium tuberculosis
MIRU-VNTR
RDRio
title_short Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
title_full Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
title_fullStr Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
title_full_unstemmed Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
title_sort Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years
author Soares, Renata Oliveira
author_facet Soares, Renata Oliveira
Macedo, Maíra Bidart de
Groll, Andrea Von
Silva, Pedro Eduardo Almeida da
author_role author
author2 Macedo, Maíra Bidart de
Groll, Andrea Von
Silva, Pedro Eduardo Almeida da
author2_role author
author
author
dc.contributor.author.fl_str_mv Soares, Renata Oliveira
Macedo, Maíra Bidart de
Groll, Andrea Von
Silva, Pedro Eduardo Almeida da
dc.subject.por.fl_str_mv Mycobacterium tuberculosis
MIRU-VNTR
RDRio
topic Mycobacterium tuberculosis
MIRU-VNTR
RDRio
description A sublineage of Mycobacterium tuberculosis called RDRio was described in 2007. Although only recently described, this strain may have been present previously in the population, and its identification in clinical isolates will elucidate bacterial transmission dynamics and host-pathogen interactions. This study evaluated the clonal diversity of the RDRio sublineage in clinical isolates from Rio Grande-RS obtained between 1998 and 2001. Among the 45 samples analyzed by the MIRU-VNTR method, there were six clusters with two samples each and 33 orphan strains with unique pattern. The strains were distributed across several different lineages including LAM (34.04%), X (14.89%), Haarlem (12.77%), UgandaI (10.64%), S (4.26%), NEW-1 (2.13%) and Cameroon (2.13%); 14.89% of the strains matched to multiple lineages. RDRio strains were present in 28.9% of the samples and 81.25% of the identified strains belonged to the LAM family. The high clonal diversity observed in this study is a constant feature in this region. The RDRio sublineage has been in Rio Grande-RS since 1998. The continued monitoring of RDRio in clinical isolates will enhance the understanding of its epidemiological significance.
publishDate 2013
dc.date.issued.fl_str_mv 2013
dc.date.accessioned.fl_str_mv 2017-01-17T03:30:30Z
dc.date.available.fl_str_mv 2017-01-17T03:30:30Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.fl_str_mv SOARES, Renata Oliveira et al. Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years. Brazilian Journal of Microbiology, v. 44, n. 4, p. 1251-1255, 2013. Disponível em: <http://dx.doi.org/10.1590/S1517-83822013000400032 >. Acesso em: 16 jan. 2017.
dc.identifier.uri.fl_str_mv http://repositorio.furg.br/handle/1/7024
dc.identifier.issn.none.fl_str_mv 1678-4405
dc.identifier.doi.pt_BR.fl_str_mv http://dx.doi.org/10.1590/S1517-83822013000400032
identifier_str_mv SOARES, Renata Oliveira et al. Mycobacterium tuberculosis belonging to family LAM and sublineage RDRio: common strains in southern Brazil for over 10 years. Brazilian Journal of Microbiology, v. 44, n. 4, p. 1251-1255, 2013. Disponível em: <http://dx.doi.org/10.1590/S1517-83822013000400032 >. Acesso em: 16 jan. 2017.
1678-4405
url http://repositorio.furg.br/handle/1/7024
http://dx.doi.org/10.1590/S1517-83822013000400032
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