High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers

Detalhes bibliográficos
Autor(a) principal: Lima, Luciana Sampaio
Data de Publicação: 2022
Outros Autores: Proietti Junior, Aldo Aparecido, Rodrigues, Yan Corrêa, Vieira, Marcelo Cleyton da Silva, Lima, Luana Nepomuceno Gondim Costa, Souza, Cintya de Oliveira, Gonçalves, Verônica Dias, Lima, Marcelo de Oliveira, Rodrigues, Dália dos Prazeres, Lima, Karla Valéria Batista
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: http://patua.iec.gov.br//handle/iec/4541
Resumo: The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices.
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spelling Lima, Luciana SampaioProietti Junior, Aldo AparecidoRodrigues, Yan CorrêaVieira, Marcelo Cleyton da SilvaLima, Luana Nepomuceno Gondim CostaSouza, Cintya de OliveiraGonçalves, Verônica DiasLima, Marcelo de OliveiraRodrigues, Dália dos PrazeresLima, Karla Valéria Batista2022-06-02T18:32:17Z2022-06-02T18:32:17Z2022LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022.2076-2607http://patua.iec.gov.br//handle/iec/454110.3390/microorganisms10040808The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices.This study received financial support from the Federal University of Amapá through the educational incentive grant to Luciana Sampaio Lima (No. 01/2019-PSPIE/PROGEP/UNIFAP) and through the DECENTRALIZED Term of Reference of Municipal Plans of 6 Municipalities in the State of Amapá (TEDPLAN)—UNIFAP/FUNASA—Process UNIFAP No. 23125.012850/2018-87. 51 p. 2018. The APC was funded by Evandro Chagas Institute (IEC/Pa/Brazil). Yan Corrêa Rodrigues scholarship is funded by Fundação para o Desenvolvimento Científico e Tecnológico em Saúde (FIOTEC).Federal University of Amapá. Faculty of Pharmaceutical Sciences. Macapá, AP, BrazilFederal University of Amapá. Faculty of Pharmaceutical Sciences. Macapá, AP, BrazilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. Rio de Janeiro, RJ, BrazilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. Rio de Janeiro, RJ, BrazilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. 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dc.title.pt_BR.fl_str_mv High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
title High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
spellingShingle High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
Lima, Luciana Sampaio
Peixes / anatomia & histologia
Escherichia coli / patogenicidade
Ecossistema Amazônico
Arapirama gigas
Quinolonas
Resistência Microbiana a Medicamentos
title_short High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
title_full High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
title_fullStr High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
title_full_unstemmed High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
title_sort High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
author Lima, Luciana Sampaio
author_facet Lima, Luciana Sampaio
Proietti Junior, Aldo Aparecido
Rodrigues, Yan Corrêa
Vieira, Marcelo Cleyton da Silva
Lima, Luana Nepomuceno Gondim Costa
Souza, Cintya de Oliveira
Gonçalves, Verônica Dias
Lima, Marcelo de Oliveira
Rodrigues, Dália dos Prazeres
Lima, Karla Valéria Batista
author_role author
author2 Proietti Junior, Aldo Aparecido
Rodrigues, Yan Corrêa
Vieira, Marcelo Cleyton da Silva
Lima, Luana Nepomuceno Gondim Costa
Souza, Cintya de Oliveira
Gonçalves, Verônica Dias
Lima, Marcelo de Oliveira
Rodrigues, Dália dos Prazeres
Lima, Karla Valéria Batista
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Lima, Luciana Sampaio
Proietti Junior, Aldo Aparecido
Rodrigues, Yan Corrêa
Vieira, Marcelo Cleyton da Silva
Lima, Luana Nepomuceno Gondim Costa
Souza, Cintya de Oliveira
Gonçalves, Verônica Dias
Lima, Marcelo de Oliveira
Rodrigues, Dália dos Prazeres
Lima, Karla Valéria Batista
dc.subject.decsPrimary.pt_BR.fl_str_mv Peixes / anatomia & histologia
Escherichia coli / patogenicidade
Ecossistema Amazônico
Arapirama gigas
Quinolonas
Resistência Microbiana a Medicamentos
topic Peixes / anatomia & histologia
Escherichia coli / patogenicidade
Ecossistema Amazônico
Arapirama gigas
Quinolonas
Resistência Microbiana a Medicamentos
description The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-06-02T18:32:17Z
dc.date.available.fl_str_mv 2022-06-02T18:32:17Z
dc.date.issued.fl_str_mv 2022
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.citation.fl_str_mv LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022.
dc.identifier.uri.fl_str_mv http://patua.iec.gov.br//handle/iec/4541
dc.identifier.issn.-.fl_str_mv 2076-2607
dc.identifier.doi.-.fl_str_mv 10.3390/microorganisms10040808
identifier_str_mv LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022.
2076-2607
10.3390/microorganisms10040808
url http://patua.iec.gov.br//handle/iec/4541
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language eng
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