A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood

Detalhes bibliográficos
Autor(a) principal: Busser, Felipe Delatorre
Data de Publicação: 2020
Outros Autores: Coelho, Vivian Caso, Fonseca, Claudia de Abreu, Del Negro, Gilda Maria Barbaro, Shikanai-Yasuda, Maria Aparecida, Lopes, Marta Heloisa, Magri, Marcello Mihailenko Chaves, Freitas, Vera Lucia Teixeira de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista do Instituto de Medicina Tropical de São Paulo
Texto Completo: https://www.revistas.usp.br/rimtsp/article/view/166329
Resumo: Candidemia is a significant cause of bloodstream infections (BSI) in nosocomial settings. The identification of species can potentially improve the quality of care and decrease human mortality. Quantitative PCR (qPCR) was evaluated for Candida albicans detection using culture suspensions containing C. albicans, spiked human blood, the cloned qPCR target fragment (ITS2 region) and the results of these assays were compared. The assays showed a good detection limit: C. albicans DNA extracted from yeast (sensitivity 0.2 CFU/µL), spiked human blood (sensitivity 10 CFU/mL), and cloned fragment of ITS2 region (sensitivity 20 target copies/µL). The efficiency of ITS2 fragment-qPCR ranged from 89.67 to 97.07, and the linearity (R2 ) of the standard curve ranged from 0.992 to 0.999. The results showed that this ITS2-qPCR has a great potential as a molecular prototype model for the development of a test to be applied in clinical practice, greatly reducing the time of candidemia diagnosis, which is extremely important in this clinical setting.
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spelling A Real Time PCR strategy for the detection and quantification of Candida albicans in human bloodCandida albicansCandidemiaDetectionInvasive candidiasisITS2Quantitative PCRCandidemia is a significant cause of bloodstream infections (BSI) in nosocomial settings. The identification of species can potentially improve the quality of care and decrease human mortality. Quantitative PCR (qPCR) was evaluated for Candida albicans detection using culture suspensions containing C. albicans, spiked human blood, the cloned qPCR target fragment (ITS2 region) and the results of these assays were compared. The assays showed a good detection limit: C. albicans DNA extracted from yeast (sensitivity 0.2 CFU/µL), spiked human blood (sensitivity 10 CFU/mL), and cloned fragment of ITS2 region (sensitivity 20 target copies/µL). The efficiency of ITS2 fragment-qPCR ranged from 89.67 to 97.07, and the linearity (R2 ) of the standard curve ranged from 0.992 to 0.999. The results showed that this ITS2-qPCR has a great potential as a molecular prototype model for the development of a test to be applied in clinical practice, greatly reducing the time of candidemia diagnosis, which is extremely important in this clinical setting.Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo2020-02-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/xmlhttps://www.revistas.usp.br/rimtsp/article/view/16632910.1590/S1678-9946202062009Revista do Instituto de Medicina Tropical de São Paulo; Vol. 62 (2020); e9Revista do Instituto de Medicina Tropical de São Paulo; Vol. 62 (2020); e9Revista do Instituto de Medicina Tropical de São Paulo; v. 62 (2020); e91678-99460036-4665reponame:Revista do Instituto de Medicina Tropical de São Pauloinstname:Instituto de Medicina Tropical (IMT)instacron:IMTenghttps://www.revistas.usp.br/rimtsp/article/view/166329/159061https://www.revistas.usp.br/rimtsp/article/view/166329/159062Copyright (c) 2020 Revista do Instituto de Medicina Tropical de São Pauloinfo:eu-repo/semantics/openAccessBusser, Felipe DelatorreCoelho, Vivian CasoFonseca, Claudia de AbreuDel Negro, Gilda Maria BarbaroShikanai-Yasuda, Maria AparecidaLopes, Marta HeloisaMagri, Marcello Mihailenko ChavesFreitas, Vera Lucia Teixeira de2020-10-26T17:39:25Zoai:revistas.usp.br:article/166329Revistahttp://www.revistas.usp.br/rimtsp/indexPUBhttps://www.revistas.usp.br/rimtsp/oai||revimtsp@usp.br1678-99460036-4665opendoar:2022-12-13T16:52:51.592548Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)true
dc.title.none.fl_str_mv A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
title A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
spellingShingle A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
Busser, Felipe Delatorre
Candida albicans
Candidemia
Detection
Invasive candidiasis
ITS2
Quantitative PCR
title_short A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
title_full A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
title_fullStr A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
title_full_unstemmed A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
title_sort A Real Time PCR strategy for the detection and quantification of Candida albicans in human blood
author Busser, Felipe Delatorre
author_facet Busser, Felipe Delatorre
Coelho, Vivian Caso
Fonseca, Claudia de Abreu
Del Negro, Gilda Maria Barbaro
Shikanai-Yasuda, Maria Aparecida
Lopes, Marta Heloisa
Magri, Marcello Mihailenko Chaves
Freitas, Vera Lucia Teixeira de
author_role author
author2 Coelho, Vivian Caso
Fonseca, Claudia de Abreu
Del Negro, Gilda Maria Barbaro
Shikanai-Yasuda, Maria Aparecida
Lopes, Marta Heloisa
Magri, Marcello Mihailenko Chaves
Freitas, Vera Lucia Teixeira de
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Busser, Felipe Delatorre
Coelho, Vivian Caso
Fonseca, Claudia de Abreu
Del Negro, Gilda Maria Barbaro
Shikanai-Yasuda, Maria Aparecida
Lopes, Marta Heloisa
Magri, Marcello Mihailenko Chaves
Freitas, Vera Lucia Teixeira de
dc.subject.por.fl_str_mv Candida albicans
Candidemia
Detection
Invasive candidiasis
ITS2
Quantitative PCR
topic Candida albicans
Candidemia
Detection
Invasive candidiasis
ITS2
Quantitative PCR
description Candidemia is a significant cause of bloodstream infections (BSI) in nosocomial settings. The identification of species can potentially improve the quality of care and decrease human mortality. Quantitative PCR (qPCR) was evaluated for Candida albicans detection using culture suspensions containing C. albicans, spiked human blood, the cloned qPCR target fragment (ITS2 region) and the results of these assays were compared. The assays showed a good detection limit: C. albicans DNA extracted from yeast (sensitivity 0.2 CFU/µL), spiked human blood (sensitivity 10 CFU/mL), and cloned fragment of ITS2 region (sensitivity 20 target copies/µL). The efficiency of ITS2 fragment-qPCR ranged from 89.67 to 97.07, and the linearity (R2 ) of the standard curve ranged from 0.992 to 0.999. The results showed that this ITS2-qPCR has a great potential as a molecular prototype model for the development of a test to be applied in clinical practice, greatly reducing the time of candidemia diagnosis, which is extremely important in this clinical setting.
publishDate 2020
dc.date.none.fl_str_mv 2020-02-04
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/166329
10.1590/S1678-9946202062009
url https://www.revistas.usp.br/rimtsp/article/view/166329
identifier_str_mv 10.1590/S1678-9946202062009
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/166329/159061
https://www.revistas.usp.br/rimtsp/article/view/166329/159062
dc.rights.driver.fl_str_mv Copyright (c) 2020 Revista do Instituto de Medicina Tropical de São Paulo
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2020 Revista do Instituto de Medicina Tropical de São Paulo
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/xml
dc.publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
dc.source.none.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo; Vol. 62 (2020); e9
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 62 (2020); e9
Revista do Instituto de Medicina Tropical de São Paulo; v. 62 (2020); e9
1678-9946
0036-4665
reponame:Revista do Instituto de Medicina Tropical de São Paulo
instname:Instituto de Medicina Tropical (IMT)
instacron:IMT
instname_str Instituto de Medicina Tropical (IMT)
instacron_str IMT
institution IMT
reponame_str Revista do Instituto de Medicina Tropical de São Paulo
collection Revista do Instituto de Medicina Tropical de São Paulo
repository.name.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)
repository.mail.fl_str_mv ||revimtsp@usp.br
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