Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data

Detalhes bibliográficos
Autor(a) principal: Neves, Ana
Data de Publicação: 2020
Outros Autores: Vieira, Ana Rita, Sequeira, Vera, Paiva, Rafaela Barros, Gordo, Leonel Serrano, Paulo, Octávio S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/46259
Resumo: Resolution of population structure represents an effective way to define biological stocks and inform efficient fisheries management. In the present study, the phylogeography of the protogynous sparid Spondyliosoma cantharus, in the East Atlantic and Mediterranean Sea, was investigated with nuclear (S7) and mitochondrial (cytochrome b) DNA markers. Significant divergence of four regional genetic groups was observed: North Eastern Atlantic, Mediterranean Sea, Western African Transition (Cape Verde) and Gulf of Guinea (Angola). The two southern populations (Cape Verde and Angola) each comprised reciprocally monophyletic mtDNA lineages, revealed low levels of diversity in Cape Verde and high diversity for Angola despite being represented by only 14 individuals. A complete divergence between North Atlantic and Mediterranean populations was depicted by the mitochondrial marker, but a highly shared nuclear haplotype revealed an incomplete lineage sorting between these regions. Bayesian skyline plots and associated statistics revealed different dynamics among the four regions. Cape Verde showed no expansion and the expansion time estimated for Angola was much older than for the other regions. Mediterranean region seems to have experienced an early population growth but has remained with a stable population size for the last 30000 years while the North Atlantic population has been steadily growing. The lack of genetic structuring within these regions should not be taken as evidence of demographic panmixia in light of potential resolution thresholds and previous evidence of intra-regional phenotypic heterogeneity.
id RCAP_3c6002228a2ea00fe0ed8c3edfb92878
oai_identifier_str oai:repositorio.ul.pt:10451/46259
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA dataAnimalsDNA, MitochondrialPhylogeographySea BreamDatabases, Nucleic AcidHaplotypesResolution of population structure represents an effective way to define biological stocks and inform efficient fisheries management. In the present study, the phylogeography of the protogynous sparid Spondyliosoma cantharus, in the East Atlantic and Mediterranean Sea, was investigated with nuclear (S7) and mitochondrial (cytochrome b) DNA markers. Significant divergence of four regional genetic groups was observed: North Eastern Atlantic, Mediterranean Sea, Western African Transition (Cape Verde) and Gulf of Guinea (Angola). The two southern populations (Cape Verde and Angola) each comprised reciprocally monophyletic mtDNA lineages, revealed low levels of diversity in Cape Verde and high diversity for Angola despite being represented by only 14 individuals. A complete divergence between North Atlantic and Mediterranean populations was depicted by the mitochondrial marker, but a highly shared nuclear haplotype revealed an incomplete lineage sorting between these regions. Bayesian skyline plots and associated statistics revealed different dynamics among the four regions. Cape Verde showed no expansion and the expansion time estimated for Angola was much older than for the other regions. Mediterranean region seems to have experienced an early population growth but has remained with a stable population size for the last 30000 years while the North Atlantic population has been steadily growing. The lack of genetic structuring within these regions should not be taken as evidence of demographic panmixia in light of potential resolution thresholds and previous evidence of intra-regional phenotypic heterogeneity.NatureRepositório da Universidade de LisboaNeves, AnaVieira, Ana RitaSequeira, VeraPaiva, Rafaela BarrosGordo, Leonel SerranoPaulo, Octávio S.2021-02-09T20:29:32Z2020-032020-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/46259engNeves, A., Vieira, A.R., Sequeira, V. et al. Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data. Sci Rep 10, 4063 (2020). https://doi.org/10.1038/s41598-020-61050-x10.1038/s41598-020-61050-xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:48:28Zoai:repositorio.ul.pt:10451/46259Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:58:29.337609Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
title Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
spellingShingle Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
Neves, Ana
Animals
DNA, Mitochondrial
Phylogeography
Sea Bream
Databases, Nucleic Acid
Haplotypes
title_short Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
title_full Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
title_fullStr Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
title_full_unstemmed Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
title_sort Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
author Neves, Ana
author_facet Neves, Ana
Vieira, Ana Rita
Sequeira, Vera
Paiva, Rafaela Barros
Gordo, Leonel Serrano
Paulo, Octávio S.
author_role author
author2 Vieira, Ana Rita
Sequeira, Vera
Paiva, Rafaela Barros
Gordo, Leonel Serrano
Paulo, Octávio S.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Neves, Ana
Vieira, Ana Rita
Sequeira, Vera
Paiva, Rafaela Barros
Gordo, Leonel Serrano
Paulo, Octávio S.
dc.subject.por.fl_str_mv Animals
DNA, Mitochondrial
Phylogeography
Sea Bream
Databases, Nucleic Acid
Haplotypes
topic Animals
DNA, Mitochondrial
Phylogeography
Sea Bream
Databases, Nucleic Acid
Haplotypes
description Resolution of population structure represents an effective way to define biological stocks and inform efficient fisheries management. In the present study, the phylogeography of the protogynous sparid Spondyliosoma cantharus, in the East Atlantic and Mediterranean Sea, was investigated with nuclear (S7) and mitochondrial (cytochrome b) DNA markers. Significant divergence of four regional genetic groups was observed: North Eastern Atlantic, Mediterranean Sea, Western African Transition (Cape Verde) and Gulf of Guinea (Angola). The two southern populations (Cape Verde and Angola) each comprised reciprocally monophyletic mtDNA lineages, revealed low levels of diversity in Cape Verde and high diversity for Angola despite being represented by only 14 individuals. A complete divergence between North Atlantic and Mediterranean populations was depicted by the mitochondrial marker, but a highly shared nuclear haplotype revealed an incomplete lineage sorting between these regions. Bayesian skyline plots and associated statistics revealed different dynamics among the four regions. Cape Verde showed no expansion and the expansion time estimated for Angola was much older than for the other regions. Mediterranean region seems to have experienced an early population growth but has remained with a stable population size for the last 30000 years while the North Atlantic population has been steadily growing. The lack of genetic structuring within these regions should not be taken as evidence of demographic panmixia in light of potential resolution thresholds and previous evidence of intra-regional phenotypic heterogeneity.
publishDate 2020
dc.date.none.fl_str_mv 2020-03
2020-03-01T00:00:00Z
2021-02-09T20:29:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/46259
url http://hdl.handle.net/10451/46259
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Neves, A., Vieira, A.R., Sequeira, V. et al. Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data. Sci Rep 10, 4063 (2020). https://doi.org/10.1038/s41598-020-61050-x
10.1038/s41598-020-61050-x
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature
publisher.none.fl_str_mv Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799134530849734656