Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases

Detalhes bibliográficos
Autor(a) principal: Ramos,J
Data de Publicação: 2016
Outros Autores: Kockelkorn,TTJP, Ramos,I, Ramos,R, Grutters,J, Viergever,MA, van Ginneken,B, Aurélio Campilho
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://repositorio.inesctec.pt/handle/123456789/5653
http://dx.doi.org/10.1109/jbhi.2014.2375491
Resumo: Content-based image retrieval (CBIR) is a search technology that could aid medical diagnosis by retrieving and presenting earlier reported cases that are related to the one being diagnosed. To retrieve relevant cases, CBIR systems depend on supervised learning to map low-level image contents to high-level diagnostic concepts. However, the annotation by medical doctors for training and evaluation purposes is a difficult and time-consuming task, which restricts the supervised learning phase to specific CBIR problems of well-defined clinical applications. This paper proposes a new technique that automatically learns the similarity between the several exams from textual distances extracted from radiology reports, thereby successfully reducing the number of annotations needed. Our method first infers the relation between patients by using information retrieval techniques to determine the textual distances between patient radiology reports. These distances are subsequently used to supervise a metric learning algorithm, that transforms the image space accordingly to textual distances. CBIR systems with different image descriptions and different levels of medical annotations were evaluated, with and without supervision from textual distances, using a database of computer tomography scans of patients with interstitial lung diseases. The proposed method consistently improves CBIR mean average precision, with improvements that can reach 38%, and more marked gains for small annotation sets. Given the overall availability of radiology reports in picture archiving and communication systems, the proposed approach can be broadly applied to CBIR systems in different medical problems, and may facilitate the introduction of CBIR in clinical practice.
id RCAP_47644d57610fdc4de2ca0d086663b45b
oai_identifier_str oai:repositorio.inesctec.pt:123456789/5653
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung DiseasesContent-based image retrieval (CBIR) is a search technology that could aid medical diagnosis by retrieving and presenting earlier reported cases that are related to the one being diagnosed. To retrieve relevant cases, CBIR systems depend on supervised learning to map low-level image contents to high-level diagnostic concepts. However, the annotation by medical doctors for training and evaluation purposes is a difficult and time-consuming task, which restricts the supervised learning phase to specific CBIR problems of well-defined clinical applications. This paper proposes a new technique that automatically learns the similarity between the several exams from textual distances extracted from radiology reports, thereby successfully reducing the number of annotations needed. Our method first infers the relation between patients by using information retrieval techniques to determine the textual distances between patient radiology reports. These distances are subsequently used to supervise a metric learning algorithm, that transforms the image space accordingly to textual distances. CBIR systems with different image descriptions and different levels of medical annotations were evaluated, with and without supervision from textual distances, using a database of computer tomography scans of patients with interstitial lung diseases. The proposed method consistently improves CBIR mean average precision, with improvements that can reach 38%, and more marked gains for small annotation sets. Given the overall availability of radiology reports in picture archiving and communication systems, the proposed approach can be broadly applied to CBIR systems in different medical problems, and may facilitate the introduction of CBIR in clinical practice.2018-01-06T16:36:02Z2016-01-01T00:00:00Z2016info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://repositorio.inesctec.pt/handle/123456789/5653http://dx.doi.org/10.1109/jbhi.2014.2375491engRamos,JKockelkorn,TTJPRamos,IRamos,RGrutters,JViergever,MAvan Ginneken,BAurélio Campilhoinfo:eu-repo/semantics/embargoedAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-05-15T10:20:49Zoai:repositorio.inesctec.pt:123456789/5653Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:53:40.129450Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
title Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
spellingShingle Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
Ramos,J
title_short Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
title_full Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
title_fullStr Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
title_full_unstemmed Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
title_sort Content-Based Image Retrieval by Metric Learning From Radiology Reports: Application to Interstitial Lung Diseases
author Ramos,J
author_facet Ramos,J
Kockelkorn,TTJP
Ramos,I
Ramos,R
Grutters,J
Viergever,MA
van Ginneken,B
Aurélio Campilho
author_role author
author2 Kockelkorn,TTJP
Ramos,I
Ramos,R
Grutters,J
Viergever,MA
van Ginneken,B
Aurélio Campilho
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ramos,J
Kockelkorn,TTJP
Ramos,I
Ramos,R
Grutters,J
Viergever,MA
van Ginneken,B
Aurélio Campilho
description Content-based image retrieval (CBIR) is a search technology that could aid medical diagnosis by retrieving and presenting earlier reported cases that are related to the one being diagnosed. To retrieve relevant cases, CBIR systems depend on supervised learning to map low-level image contents to high-level diagnostic concepts. However, the annotation by medical doctors for training and evaluation purposes is a difficult and time-consuming task, which restricts the supervised learning phase to specific CBIR problems of well-defined clinical applications. This paper proposes a new technique that automatically learns the similarity between the several exams from textual distances extracted from radiology reports, thereby successfully reducing the number of annotations needed. Our method first infers the relation between patients by using information retrieval techniques to determine the textual distances between patient radiology reports. These distances are subsequently used to supervise a metric learning algorithm, that transforms the image space accordingly to textual distances. CBIR systems with different image descriptions and different levels of medical annotations were evaluated, with and without supervision from textual distances, using a database of computer tomography scans of patients with interstitial lung diseases. The proposed method consistently improves CBIR mean average precision, with improvements that can reach 38%, and more marked gains for small annotation sets. Given the overall availability of radiology reports in picture archiving and communication systems, the proposed approach can be broadly applied to CBIR systems in different medical problems, and may facilitate the introduction of CBIR in clinical practice.
publishDate 2016
dc.date.none.fl_str_mv 2016-01-01T00:00:00Z
2016
2018-01-06T16:36:02Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.inesctec.pt/handle/123456789/5653
http://dx.doi.org/10.1109/jbhi.2014.2375491
url http://repositorio.inesctec.pt/handle/123456789/5653
http://dx.doi.org/10.1109/jbhi.2014.2375491
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/embargoedAccess
eu_rights_str_mv embargoedAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799131610532020224