Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study

Detalhes bibliográficos
Autor(a) principal: Martins, M
Data de Publicação: 2015
Outros Autores: Williams, A H, Comeau, M, Marion, M, Ziegler, J T, Freedman, B I, Merrill, J T, Glenn, S B, Kelly, J A, Sivils, K M, James, J A, Guthridge, J M, Alarcón-Riquelme, M E, Bae, S-C, Kim, J-H, Kim, D, Anaya, J-M, Boackle, S A, Criswell, L A, Kimberly, R P, Alarcón, G S, Brown, E E, Vilá, L M, Petri, M A, Ramsey-Goldman, R, Niewold, T B, Tsao, B P, Gilkeson, G S, Kamen, D L, Jacob, C O, Stevens, A M, Gaffney, P M, Harley, J B, Langefeld, C D, Fesel, C
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/678
Resumo: A classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism.
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spelling Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic studyAdultAntigens, CD3Asian Continental Ancestry GroupCase-Control StudiesEuropean Continental Ancestry GroupFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHaplotypesHumansLupus Erythematosus, SystemicMalePolymorphism, Single NucleotideT-LymphocytesA classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism.National Institutes of Health grants: (UL1RR025741, K24AR002138, P602AR30692, P01AR49084, UL1TR000165, P01AI083194, RO1AR43814, P60AR053308, UL1TR000004, AR43727, R21AI070304, RO1AR057172, UL1RR025014, R01AR051545-03, UL1RR029882, P60AR062755, P30AR53483, U19AI082714, P30GM103510, U01AI101934, AI063274, AR056360, AI083194, R37AI024717, P01083194, P01AR049084, PR094002); Northwestern University Feinberg School of Medicine; University of Alabama Birmingham; National Institute of Arthritis and Musculoskeletal and Skin Diseases; University of California Los Angeles; University of California San Francisco; Hopkins University; University of Colorado School of Medicine; University of Southern California; Seattle Children's Research Institute Arthritis Foundation; Medical University of South Carolina; Oklahoma Medical Research Foundation; Cincinnati Children's Hospital Medical Center; US Departments of Defense grant: (PR094002); Veterans Affairs; Alliance for Lupus Research; Kirkland Scholar Award; Korea Healthcare technology R & D project: (A121983); Ministry for Health and Welfare; Republic of Korea; Swedish Research Council; Instituto de Salud Carlos III grant: (PS09/00129); European Union FEDER funds; Fundação para a Ciência e Tecnologia fellowships: (SFRH/BPD/29354/2006, SFRH/BPD/34648/2007).Nature Publishing GroupARCAMartins, MWilliams, A HComeau, MMarion, MZiegler, J TFreedman, B IMerrill, J TGlenn, S BKelly, J ASivils, K MJames, J AGuthridge, J MAlarcón-Riquelme, M EBae, S-CKim, J-HKim, DAnaya, J-MBoackle, S ACriswell, L AKimberly, R PAlarcón, G SBrown, E EVilá, L MPetri, M ARamsey-Goldman, RNiewold, T BTsao, B PGilkeson, G SKamen, D LJacob, C OStevens, A MGaffney, P MHarley, J BLangefeld, C DFesel, C2016-07-08T12:20:50Z2015-032015-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/678engMartins, M., Williams, A. H., Comeau, M., Marion, M., Ziegler, J. T., Freedman, B. I., Merrill, J. T., Glenn, S. B., Kelly, J. A., Sivils, K. M., James, J. A., Guthridge, J. M., Alarcón-Riquelme, M. E., Bae, S.-C., Kim, J.-H., Kim, D., Anaya, J.-M., Boackle, S. A., Criswell, L. A., Kimberly, R. P., Alarcón, G. S., Brown, E. E., Vilá, L. M., Petri, M. A., Ramsey-Goldman, R., Niewold, T. B., Tsao, B. P., Gilkeson, G. S., Kamen, D. L., Jacob, C. O., Stevens, A. M., Gaffney, P. M., Harley, J. B., Langefeld, C. D., Fesel, C. (2015). Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study. Genes Immun, 16(2), 142–150.10.1038/gene.2014.73info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:35:04ZPortal AgregadorONG
dc.title.none.fl_str_mv Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
title Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
spellingShingle Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
Martins, M
Adult
Antigens, CD3
Asian Continental Ancestry Group
Case-Control Studies
European Continental Ancestry Group
Female
Genetic Association Studies
Genetic Predisposition to Disease
Haplotypes
Humans
Lupus Erythematosus, Systemic
Male
Polymorphism, Single Nucleotide
T-Lymphocytes
title_short Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
title_full Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
title_fullStr Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
title_full_unstemmed Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
title_sort Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
author Martins, M
author_facet Martins, M
Williams, A H
Comeau, M
Marion, M
Ziegler, J T
Freedman, B I
Merrill, J T
Glenn, S B
Kelly, J A
Sivils, K M
James, J A
Guthridge, J M
Alarcón-Riquelme, M E
Bae, S-C
Kim, J-H
Kim, D
Anaya, J-M
Boackle, S A
Criswell, L A
Kimberly, R P
Alarcón, G S
Brown, E E
Vilá, L M
Petri, M A
Ramsey-Goldman, R
Niewold, T B
Tsao, B P
Gilkeson, G S
Kamen, D L
Jacob, C O
Stevens, A M
Gaffney, P M
Harley, J B
Langefeld, C D
Fesel, C
author_role author
author2 Williams, A H
Comeau, M
Marion, M
Ziegler, J T
Freedman, B I
Merrill, J T
Glenn, S B
Kelly, J A
Sivils, K M
James, J A
Guthridge, J M
Alarcón-Riquelme, M E
Bae, S-C
Kim, J-H
Kim, D
Anaya, J-M
Boackle, S A
Criswell, L A
Kimberly, R P
Alarcón, G S
Brown, E E
Vilá, L M
Petri, M A
Ramsey-Goldman, R
Niewold, T B
Tsao, B P
Gilkeson, G S
Kamen, D L
Jacob, C O
Stevens, A M
Gaffney, P M
Harley, J B
Langefeld, C D
Fesel, C
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Martins, M
Williams, A H
Comeau, M
Marion, M
Ziegler, J T
Freedman, B I
Merrill, J T
Glenn, S B
Kelly, J A
Sivils, K M
James, J A
Guthridge, J M
Alarcón-Riquelme, M E
Bae, S-C
Kim, J-H
Kim, D
Anaya, J-M
Boackle, S A
Criswell, L A
Kimberly, R P
Alarcón, G S
Brown, E E
Vilá, L M
Petri, M A
Ramsey-Goldman, R
Niewold, T B
Tsao, B P
Gilkeson, G S
Kamen, D L
Jacob, C O
Stevens, A M
Gaffney, P M
Harley, J B
Langefeld, C D
Fesel, C
dc.subject.por.fl_str_mv Adult
Antigens, CD3
Asian Continental Ancestry Group
Case-Control Studies
European Continental Ancestry Group
Female
Genetic Association Studies
Genetic Predisposition to Disease
Haplotypes
Humans
Lupus Erythematosus, Systemic
Male
Polymorphism, Single Nucleotide
T-Lymphocytes
topic Adult
Antigens, CD3
Asian Continental Ancestry Group
Case-Control Studies
European Continental Ancestry Group
Female
Genetic Association Studies
Genetic Predisposition to Disease
Haplotypes
Humans
Lupus Erythematosus, Systemic
Male
Polymorphism, Single Nucleotide
T-Lymphocytes
description A classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism.
publishDate 2015
dc.date.none.fl_str_mv 2015-03
2015-03-01T00:00:00Z
2016-07-08T12:20:50Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/678
url http://hdl.handle.net/10400.7/678
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Martins, M., Williams, A. H., Comeau, M., Marion, M., Ziegler, J. T., Freedman, B. I., Merrill, J. T., Glenn, S. B., Kelly, J. A., Sivils, K. M., James, J. A., Guthridge, J. M., Alarcón-Riquelme, M. E., Bae, S.-C., Kim, J.-H., Kim, D., Anaya, J.-M., Boackle, S. A., Criswell, L. A., Kimberly, R. P., Alarcón, G. S., Brown, E. E., Vilá, L. M., Petri, M. A., Ramsey-Goldman, R., Niewold, T. B., Tsao, B. P., Gilkeson, G. S., Kamen, D. L., Jacob, C. O., Stevens, A. M., Gaffney, P. M., Harley, J. B., Langefeld, C. D., Fesel, C. (2015). Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study. Genes Immun, 16(2), 142–150.
10.1038/gene.2014.73
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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