Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols

Detalhes bibliográficos
Autor(a) principal: Smith, Julie
Data de Publicação: 2020
Outros Autores: Faria, Cláudia Sofia, Qvist, Camilla Christine, Melchior, Linea C., Lauridsen, Thomas, Antunes, Angélica
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.21/12187
Resumo: Aims: Though formalin remains to be the gold standard fixative in pathology departments, analytical challenges persist for nucleic acid evaluations. In our laboratory, formalin fixation of skin samples, in particular, impairs diagnostic accuracy and demands repetition of biopsies and analytical procedures. PAXgene Tissue Systems may be an alternative; however, according to manufacturer specifications, it only allows fixation for 48 hours before having to add a stabilizer. This may be a challenge in laboratories, which are closed on weekends and bank holidays. Our aim was to validate this alternative fixative for dermatological samples with prolonged fixation times using standard laboratory protocols developed for formalin-fixed specimens. We compared the results with gold standard formalin fixation. Methods: Skin specimens were formalin or PAXgene fixed for either 2 hours, 24 hours, 3 days or 7 days, paraffin-embedded, analyzed, and scored by observers. Results: Generally, formalin outperformed PAXgene fixation in H&E stains and fluorescence in situ hybridization (FISH), but both seem usable for diagnostics. The time of PAXgene fixation did not have an impact on alcian blue-Van Gieson (ABVG), H&E (p=0.48), nor immunohistochemistry (p=0.74). There was a tendency towards best PAXgene performance at 24 hours of fixation for FISH and for DNA integrity analysis 24 hours or 3 days. Conclusions: Prolonging PAXgene fixation time to 3 days before adding stabilizer does not seem to have a major impact on the performance of general diagnostic analysis, but our preliminary results show the optimisation of internal protocols is needed. PAXgene is an expensive alternative and may be confined to some dermatological samples.
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spelling Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocolsDiagnostic techniquesProceduresImmunohistochemistryMedical laboratory scienceMolecular biologySkinAims: Though formalin remains to be the gold standard fixative in pathology departments, analytical challenges persist for nucleic acid evaluations. In our laboratory, formalin fixation of skin samples, in particular, impairs diagnostic accuracy and demands repetition of biopsies and analytical procedures. PAXgene Tissue Systems may be an alternative; however, according to manufacturer specifications, it only allows fixation for 48 hours before having to add a stabilizer. This may be a challenge in laboratories, which are closed on weekends and bank holidays. Our aim was to validate this alternative fixative for dermatological samples with prolonged fixation times using standard laboratory protocols developed for formalin-fixed specimens. We compared the results with gold standard formalin fixation. Methods: Skin specimens were formalin or PAXgene fixed for either 2 hours, 24 hours, 3 days or 7 days, paraffin-embedded, analyzed, and scored by observers. Results: Generally, formalin outperformed PAXgene fixation in H&E stains and fluorescence in situ hybridization (FISH), but both seem usable for diagnostics. The time of PAXgene fixation did not have an impact on alcian blue-Van Gieson (ABVG), H&E (p=0.48), nor immunohistochemistry (p=0.74). There was a tendency towards best PAXgene performance at 24 hours of fixation for FISH and for DNA integrity analysis 24 hours or 3 days. Conclusions: Prolonging PAXgene fixation time to 3 days before adding stabilizer does not seem to have a major impact on the performance of general diagnostic analysis, but our preliminary results show the optimisation of internal protocols is needed. PAXgene is an expensive alternative and may be confined to some dermatological samples.BMJ Publishing GroupRCIPLSmith, JulieFaria, Cláudia SofiaQvist, Camilla ChristineMelchior, Linea C.Lauridsen, ThomasAntunes, Angélica2020-08-25T14:48:16Z2024-03-26T00:00:00Z2021-032021-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.21/12187engSmith J, Antunes A, Faria CS, Qvist CC, Melchior LC, Lauridsen T. Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols. J Clin Pathol. 2021;74(3):149-56.10.1136/jclinpath-2020-206612info:eu-repo/semantics/embargoedAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-08-03T10:04:37Zoai:repositorio.ipl.pt:10400.21/12187Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:20:19.480061Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
title Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
spellingShingle Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
Smith, Julie
Diagnostic techniques
Procedures
Immunohistochemistry
Medical laboratory science
Molecular biology
Skin
title_short Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
title_full Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
title_fullStr Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
title_full_unstemmed Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
title_sort Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols
author Smith, Julie
author_facet Smith, Julie
Faria, Cláudia Sofia
Qvist, Camilla Christine
Melchior, Linea C.
Lauridsen, Thomas
Antunes, Angélica
author_role author
author2 Faria, Cláudia Sofia
Qvist, Camilla Christine
Melchior, Linea C.
Lauridsen, Thomas
Antunes, Angélica
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv RCIPL
dc.contributor.author.fl_str_mv Smith, Julie
Faria, Cláudia Sofia
Qvist, Camilla Christine
Melchior, Linea C.
Lauridsen, Thomas
Antunes, Angélica
dc.subject.por.fl_str_mv Diagnostic techniques
Procedures
Immunohistochemistry
Medical laboratory science
Molecular biology
Skin
topic Diagnostic techniques
Procedures
Immunohistochemistry
Medical laboratory science
Molecular biology
Skin
description Aims: Though formalin remains to be the gold standard fixative in pathology departments, analytical challenges persist for nucleic acid evaluations. In our laboratory, formalin fixation of skin samples, in particular, impairs diagnostic accuracy and demands repetition of biopsies and analytical procedures. PAXgene Tissue Systems may be an alternative; however, according to manufacturer specifications, it only allows fixation for 48 hours before having to add a stabilizer. This may be a challenge in laboratories, which are closed on weekends and bank holidays. Our aim was to validate this alternative fixative for dermatological samples with prolonged fixation times using standard laboratory protocols developed for formalin-fixed specimens. We compared the results with gold standard formalin fixation. Methods: Skin specimens were formalin or PAXgene fixed for either 2 hours, 24 hours, 3 days or 7 days, paraffin-embedded, analyzed, and scored by observers. Results: Generally, formalin outperformed PAXgene fixation in H&E stains and fluorescence in situ hybridization (FISH), but both seem usable for diagnostics. The time of PAXgene fixation did not have an impact on alcian blue-Van Gieson (ABVG), H&E (p=0.48), nor immunohistochemistry (p=0.74). There was a tendency towards best PAXgene performance at 24 hours of fixation for FISH and for DNA integrity analysis 24 hours or 3 days. Conclusions: Prolonging PAXgene fixation time to 3 days before adding stabilizer does not seem to have a major impact on the performance of general diagnostic analysis, but our preliminary results show the optimisation of internal protocols is needed. PAXgene is an expensive alternative and may be confined to some dermatological samples.
publishDate 2020
dc.date.none.fl_str_mv 2020-08-25T14:48:16Z
2021-03
2021-03-01T00:00:00Z
2024-03-26T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.21/12187
url http://hdl.handle.net/10400.21/12187
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Smith J, Antunes A, Faria CS, Qvist CC, Melchior LC, Lauridsen T. Prolonging fixation time of an alternative fixative to formalin for dermatological samples using standard laboratory protocols. J Clin Pathol. 2021;74(3):149-56.
10.1136/jclinpath-2020-206612
dc.rights.driver.fl_str_mv info:eu-repo/semantics/embargoedAccess
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dc.publisher.none.fl_str_mv BMJ Publishing Group
publisher.none.fl_str_mv BMJ Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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