A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing

Detalhes bibliográficos
Autor(a) principal: Bourbon, M.
Data de Publicação: 2007
Outros Autores: Sun, X.M., Soutar, A.K.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.18/331
Resumo: Familial hypercholesterolaemia (FH) is usually caused by mutations in the low density lipoprotein (LDL) receptor gene (LDLR) that impair clearance of LDL from the circulation. The increased risk of premature coronary heart disease associated with FH can be reduced by dietary advice and treatment with lipid-lowering drug therapy, but it is important to identify affected individuals at an early stage. Several programmes for genetic diagnosis of FH that rely on identifying nucleotide substitutions in genomic DNA have been initiated, but the validity of these is dependent on distinguishing between a silent nucleotide variant and a mutation that affects LDL-receptor function. Here we describe a single nucleotide substitution in the coding region of exon 9 of LDLR that is an apparently silent polymorphism: CGG (Arg406) to AGG (Arg). Analysis of mRNA from the patient's cells showed that the mutation introduces a new splice site that is used to the exclusion of the natural splice site and causes a deletion of 31 bp from the mRNA, predicted to introduce premature termination four codons after R406. This finding emphasizes the caution needed in genetic diagnosis of FH based on genomic DNA sequence alone.
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spelling A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicingFamilial hypercholesterolaemiaGenetic screeningDNA-based diagnosisDoenças Cardio e Cérebro-vascularesFamilial hypercholesterolaemia (FH) is usually caused by mutations in the low density lipoprotein (LDL) receptor gene (LDLR) that impair clearance of LDL from the circulation. The increased risk of premature coronary heart disease associated with FH can be reduced by dietary advice and treatment with lipid-lowering drug therapy, but it is important to identify affected individuals at an early stage. Several programmes for genetic diagnosis of FH that rely on identifying nucleotide substitutions in genomic DNA have been initiated, but the validity of these is dependent on distinguishing between a silent nucleotide variant and a mutation that affects LDL-receptor function. Here we describe a single nucleotide substitution in the coding region of exon 9 of LDLR that is an apparently silent polymorphism: CGG (Arg406) to AGG (Arg). Analysis of mRNA from the patient's cells showed that the mutation introduces a new splice site that is used to the exclusion of the natural splice site and causes a deletion of 31 bp from the mRNA, predicted to introduce premature termination four codons after R406. This finding emphasizes the caution needed in genetic diagnosis of FH based on genomic DNA sequence alone.ElsevierRepositório Científico do Instituto Nacional de SaúdeBourbon, M.Sun, X.M.Soutar, A.K.2011-11-30T17:21:06Z2007-02-282007-02-28T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.18/331engAtherosclerosis. 2007 Nov;195(1):e17-20. Epub 2007 Feb 280021-9150doi:10.1016/j.atherosclerosis.2007.01.034info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-20T15:38:08Zoai:repositorio.insa.pt:10400.18/331Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:35:33.459642Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
title A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
spellingShingle A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
Bourbon, M.
Familial hypercholesterolaemia
Genetic screening
DNA-based diagnosis
Doenças Cardio e Cérebro-vasculares
title_short A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
title_full A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
title_fullStr A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
title_full_unstemmed A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
title_sort A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
author Bourbon, M.
author_facet Bourbon, M.
Sun, X.M.
Soutar, A.K.
author_role author
author2 Sun, X.M.
Soutar, A.K.
author2_role author
author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Nacional de Saúde
dc.contributor.author.fl_str_mv Bourbon, M.
Sun, X.M.
Soutar, A.K.
dc.subject.por.fl_str_mv Familial hypercholesterolaemia
Genetic screening
DNA-based diagnosis
Doenças Cardio e Cérebro-vasculares
topic Familial hypercholesterolaemia
Genetic screening
DNA-based diagnosis
Doenças Cardio e Cérebro-vasculares
description Familial hypercholesterolaemia (FH) is usually caused by mutations in the low density lipoprotein (LDL) receptor gene (LDLR) that impair clearance of LDL from the circulation. The increased risk of premature coronary heart disease associated with FH can be reduced by dietary advice and treatment with lipid-lowering drug therapy, but it is important to identify affected individuals at an early stage. Several programmes for genetic diagnosis of FH that rely on identifying nucleotide substitutions in genomic DNA have been initiated, but the validity of these is dependent on distinguishing between a silent nucleotide variant and a mutation that affects LDL-receptor function. Here we describe a single nucleotide substitution in the coding region of exon 9 of LDLR that is an apparently silent polymorphism: CGG (Arg406) to AGG (Arg). Analysis of mRNA from the patient's cells showed that the mutation introduces a new splice site that is used to the exclusion of the natural splice site and causes a deletion of 31 bp from the mRNA, predicted to introduce premature termination four codons after R406. This finding emphasizes the caution needed in genetic diagnosis of FH based on genomic DNA sequence alone.
publishDate 2007
dc.date.none.fl_str_mv 2007-02-28
2007-02-28T00:00:00Z
2011-11-30T17:21:06Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.18/331
url http://hdl.handle.net/10400.18/331
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Atherosclerosis. 2007 Nov;195(1):e17-20. Epub 2007 Feb 28
0021-9150
doi:10.1016/j.atherosclerosis.2007.01.034
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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