Invasive and minimally invasive optical detection of pigment accumulation in brain cortex

Detalhes bibliográficos
Autor(a) principal: Oliveira, Luís
Data de Publicação: 2022
Outros Autores: Gonçalves, Tânia, Pinheiro, Maria, Fernandes, Luís, Martins, Inês, Silva, Hugo, Oliveira, Hélder, Tuchin, Valery
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.22/22263
Resumo: The estimation of the spectral absorption coefficient of biological tissues provides valuable information that can be used in diagnostic procedures. Such estimation can be made using direct calculations from invasive spectral measurements or though machine learning algorithms based on noninvasive or minimally invasive spectral measurements. Since in a noninvasive approach, the number of measurements is limited, an exploratory study to investigate the use of artificial generated data in machine learning techniques was performed to evaluate the spectral absorption coefficient of the brain cortex. Considering the spectral absorption coefficient that was calculated directly from invasive measurements as reference, the similar spectra that were estimated through different machine learning approaches were able to provide comparable information in terms of pigment, DNA and blood contents in the cortex. The best estimated results were obtained based only on the experimental measurements, but it was also observed that artificially generated spectra can be used in the estimations to increase accuracy, provided that a significant number of experimental spectra are available both to generate the complementary artificial spectra and to estimate the resulting absorption spectrum of the tissue.
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spelling Invasive and minimally invasive optical detection of pigment accumulation in brain cortexTissue spectroscopyDiffuse reflectanceAbsorption coefficientBrain cortexDNA contentBlood contentPigment detectionMachine learningGenerative modelsThe estimation of the spectral absorption coefficient of biological tissues provides valuable information that can be used in diagnostic procedures. Such estimation can be made using direct calculations from invasive spectral measurements or though machine learning algorithms based on noninvasive or minimally invasive spectral measurements. Since in a noninvasive approach, the number of measurements is limited, an exploratory study to investigate the use of artificial generated data in machine learning techniques was performed to evaluate the spectral absorption coefficient of the brain cortex. Considering the spectral absorption coefficient that was calculated directly from invasive measurements as reference, the similar spectra that were estimated through different machine learning approaches were able to provide comparable information in terms of pigment, DNA and blood contents in the cortex. The best estimated results were obtained based only on the experimental measurements, but it was also observed that artificially generated spectra can be used in the estimations to increase accuracy, provided that a significant number of experimental spectra are available both to generate the complementary artificial spectra and to estimate the resulting absorption spectrum of the tissue.The authors of the article knew well and communicated with Alexey Bahskatov for many years, especially Valery V. Tuchin and Luís M. Oliveira. We had many joint research discussions, co-authorship in various publications and cooperation in the past. Plans for the future had already been pointed-out, but due to Alexey’s sudden departure, such plans were mercilessly interrupted. We have lost a great scientist and a person with a huge soul, sociable, but at the same time modest and kind. We will always remember our warm meetings and fruitful work with Alexey. This research was supported by the Portuguese grant FCT-UIDB/04730/2020. I.S.M. was supported by the Portuguese grant FCT-UIBD/151528/2021. The work of V.V.T. was supported by the Government of the Russian Federation, Project No. 075-15-2021-615.Samara National Research University, Russian FederationRepositório Científico do Instituto Politécnico do PortoOliveira, LuísGonçalves, TâniaPinheiro, MariaFernandes, LuísMartins, InêsSilva, HugoOliveira, HélderTuchin, ValeryOliveira, Luís2023-02-14T09:46:33Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.22/22263eng10.18287/JBPE22.08.010304info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-03-13T13:18:53Zoai:recipp.ipp.pt:10400.22/22263Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:42:19.518528Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
title Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
spellingShingle Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
Oliveira, Luís
Tissue spectroscopy
Diffuse reflectance
Absorption coefficient
Brain cortex
DNA content
Blood content
Pigment detection
Machine learning
Generative models
title_short Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
title_full Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
title_fullStr Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
title_full_unstemmed Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
title_sort Invasive and minimally invasive optical detection of pigment accumulation in brain cortex
author Oliveira, Luís
author_facet Oliveira, Luís
Gonçalves, Tânia
Pinheiro, Maria
Fernandes, Luís
Martins, Inês
Silva, Hugo
Oliveira, Hélder
Tuchin, Valery
author_role author
author2 Gonçalves, Tânia
Pinheiro, Maria
Fernandes, Luís
Martins, Inês
Silva, Hugo
Oliveira, Hélder
Tuchin, Valery
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Politécnico do Porto
dc.contributor.author.fl_str_mv Oliveira, Luís
Gonçalves, Tânia
Pinheiro, Maria
Fernandes, Luís
Martins, Inês
Silva, Hugo
Oliveira, Hélder
Tuchin, Valery
Oliveira, Luís
dc.subject.por.fl_str_mv Tissue spectroscopy
Diffuse reflectance
Absorption coefficient
Brain cortex
DNA content
Blood content
Pigment detection
Machine learning
Generative models
topic Tissue spectroscopy
Diffuse reflectance
Absorption coefficient
Brain cortex
DNA content
Blood content
Pigment detection
Machine learning
Generative models
description The estimation of the spectral absorption coefficient of biological tissues provides valuable information that can be used in diagnostic procedures. Such estimation can be made using direct calculations from invasive spectral measurements or though machine learning algorithms based on noninvasive or minimally invasive spectral measurements. Since in a noninvasive approach, the number of measurements is limited, an exploratory study to investigate the use of artificial generated data in machine learning techniques was performed to evaluate the spectral absorption coefficient of the brain cortex. Considering the spectral absorption coefficient that was calculated directly from invasive measurements as reference, the similar spectra that were estimated through different machine learning approaches were able to provide comparable information in terms of pigment, DNA and blood contents in the cortex. The best estimated results were obtained based only on the experimental measurements, but it was also observed that artificially generated spectra can be used in the estimations to increase accuracy, provided that a significant number of experimental spectra are available both to generate the complementary artificial spectra and to estimate the resulting absorption spectrum of the tissue.
publishDate 2022
dc.date.none.fl_str_mv 2022
2022-01-01T00:00:00Z
2023-02-14T09:46:33Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.22/22263
url http://hdl.handle.net/10400.22/22263
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.18287/JBPE22.08.010304
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Samara National Research University, Russian Federation
publisher.none.fl_str_mv Samara National Research University, Russian Federation
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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