Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells
Autor(a) principal: | |
---|---|
Data de Publicação: | 2016 |
Tipo de documento: | Dissertação |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.6/6289 |
Resumo: | Prostate cancer is the second most frequently diagnosed type of cancer and the fifth leading cause of cancer death in men worldwide. Prostate carcinogenesis is characterized by progressive alterations in genetic and epigenetic mechanisms that deregulate gene expression. The Six Transmembrane Epithelial Antigen of the Prostate 1 (STEAP1) gene encodes a protein with six transmembrane domains. In normal tissues, STEAP1 expression is very low but is overexpressed in several human cancers, mainly in prostate cancer. Some studies have indicated that STEAP1 overexpression seems to promote cell growth, suggesting that STEAP1 may act as an oncogene. Previous studies demonstrated that STEAP1 mRNA and protein have higher stability in LNCaP prostate cancer cell lines when compared with PNT1A non-neoplastic prostate cell lines, possibly due to post-transcriptional and post-translational modifications. However, these alterations do not justify the overexpression of STEAP1 in tumor cells, suggesting that other mechanisms may be involved. Therefore, the aim of this study was to explore the hypothesis that genetic and / or epigenetic alterations may be involved in overexpression of STEAP1. In order to evaluate genetic alterations in the STEAP1 gene sequence, the promoter region of STEAP1 in LNCaP and PNT1A cells was sequenced. To study the involvement of epigenetic mechanisms, the methylation patterns of STEAP1 in PNT1A and LNCaP cells were compared. In addition, the effect of treatment with DNA methyltransferases (DNMT) and histone deacetylases (HDAC) inhibitors on STEAP1 mRNA expression in PNT1A cells was evaluated. The sequence analysis of the promoter region of STEAP1 revealed some differences in both PNT1A and LNCaP cells when compared with the available genomic sequence. In silico analysis of the identified variants revealed several alterations in the transcription factors (TF) that can bind to each allelic variant including the binding of transcriptional activators to the altered allele of the variants. The analysis of the methylation pattern of STEAP1 gene in PNT1A and LNCaP cells showed differences in the promoter region near the transcription start site. The treatment with 5-Aza-2’-deoxycytidine (DNMT inhibitor) induced a slight increase in STEAP1 mRNA expression (3 fold-variation in comparison with control group, p<0.01) while the treatment with both 5-Aza-2’-deoxycytidine and TSA (HDAC inhibitor) induced a marked increase in STEAP1 mRNA expression (15 fold-variation relatively to control, p<0.001). The difference in the methylation pattern of STEAP1 between PNT1A and LNCaP cells, along with the increased STEAP1 mRNA expression in response to DNMT and HDAC inhibitors, indicates that STEAP1 gene expression seems to be regulated by epigenetic mechanisms. |
id |
RCAP_d1f3730ced9ad688a188109cb93ced6a |
---|---|
oai_identifier_str |
oai:ubibliorum.ubi.pt:10400.6/6289 |
network_acronym_str |
RCAP |
network_name_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository_id_str |
|
spelling |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cellsCancro da PróstataEpigenéticaGenéticaSteap1Domínio/Área Científica::Engenharia e Tecnologia::Engenharia QuímicaProstate cancer is the second most frequently diagnosed type of cancer and the fifth leading cause of cancer death in men worldwide. Prostate carcinogenesis is characterized by progressive alterations in genetic and epigenetic mechanisms that deregulate gene expression. The Six Transmembrane Epithelial Antigen of the Prostate 1 (STEAP1) gene encodes a protein with six transmembrane domains. In normal tissues, STEAP1 expression is very low but is overexpressed in several human cancers, mainly in prostate cancer. Some studies have indicated that STEAP1 overexpression seems to promote cell growth, suggesting that STEAP1 may act as an oncogene. Previous studies demonstrated that STEAP1 mRNA and protein have higher stability in LNCaP prostate cancer cell lines when compared with PNT1A non-neoplastic prostate cell lines, possibly due to post-transcriptional and post-translational modifications. However, these alterations do not justify the overexpression of STEAP1 in tumor cells, suggesting that other mechanisms may be involved. Therefore, the aim of this study was to explore the hypothesis that genetic and / or epigenetic alterations may be involved in overexpression of STEAP1. In order to evaluate genetic alterations in the STEAP1 gene sequence, the promoter region of STEAP1 in LNCaP and PNT1A cells was sequenced. To study the involvement of epigenetic mechanisms, the methylation patterns of STEAP1 in PNT1A and LNCaP cells were compared. In addition, the effect of treatment with DNA methyltransferases (DNMT) and histone deacetylases (HDAC) inhibitors on STEAP1 mRNA expression in PNT1A cells was evaluated. The sequence analysis of the promoter region of STEAP1 revealed some differences in both PNT1A and LNCaP cells when compared with the available genomic sequence. In silico analysis of the identified variants revealed several alterations in the transcription factors (TF) that can bind to each allelic variant including the binding of transcriptional activators to the altered allele of the variants. The analysis of the methylation pattern of STEAP1 gene in PNT1A and LNCaP cells showed differences in the promoter region near the transcription start site. The treatment with 5-Aza-2’-deoxycytidine (DNMT inhibitor) induced a slight increase in STEAP1 mRNA expression (3 fold-variation in comparison with control group, p<0.01) while the treatment with both 5-Aza-2’-deoxycytidine and TSA (HDAC inhibitor) induced a marked increase in STEAP1 mRNA expression (15 fold-variation relatively to control, p<0.001). The difference in the methylation pattern of STEAP1 between PNT1A and LNCaP cells, along with the increased STEAP1 mRNA expression in response to DNMT and HDAC inhibitors, indicates that STEAP1 gene expression seems to be regulated by epigenetic mechanisms.O cancro da próstata é o segundo tipo de cancro mais frequentemente diagnosticado e a quinta principal causa de morte por cancro nos homens em todo o mundo. O desenvolvimento do cancro da próstata é caracterizado por alterações progressivas nos mecanismos genéticos e epigenéticos o que conduz a uma desregulação da expressão genética. O gene Six transmembrane epithelial antigen of the prostate 1 (STEAP1) codifica uma proteína com seis domínios transmembranares. Nos tecidos normais, a expressão do STEAP1 é muito baixa, no entanto é sobre-expresso em vários tipos de cancro nomeadamente no cancro da próstata. Vários estudos indicaram que a sobre-expressão do STEAP1 parece promover o crescimento celular, sugerindo que este pode actuar como um oncogene. Estudos anteriores demonstraram também que o mRNA e a proteína STEAP1 apresentam uma maior estabilidade em linhas celulares de cancro da próstata LNCaP quando comparado com as linhas celulares da próstata não-neoplásicas PNT1A. Esta diferença pode ser devida a modificações pós-transcricionais e/ou pós-translacionais. No entanto, estas alterações não justificam a sobre-expressão do STEAP1 em células tumorais, sugerindo assim o envolvimento de outros mecanismos de regulação. Portanto, o objectivo do presente trabalho foi explorar a hipótese de que alterações genéticas e/ou epigenéticas poderão estar envolvidas na sobre-expressão do STEAP1. A fim de avaliar a possível presença de alterações genéticas na sequência do gene STEAP1, foi sequenciada a região promotora do STEAP1 em células LNCaP e PNT1A. Para estudar o envolvimento de mecanismos epigenéticos, foram comparados os padrões de metilação do STEAP1 entre as linhas celulares PNT1A e LNCaP. Para além disso, foi ainda avaliado o efeito de um tratamento com inibidores das DNA metiltransferases (DNMT) e histonas desacetilases (HDAC) na expressão do gene STEAP1 em células PNT1A. A análise da sequência da região promotora do STEAP1 revelou algumas variantes tanto nas células LNCaP como PNT1A quando comparada com a sequência genómica disponível. A análise in silico das variantes mostrou diferenças nos fatores de transcrição que se podem ligar a cada variante alelica incluindo a ligação de activadores transcripcionais ao alelo alterado das variantes. A análise do padrão de metilação do STEAP1 entre células PNT1A e LNCaP mostrou diferenças na região promotora próxima do local de início da transcrição. O tratamento com 5-Aza-2’-deoxicitidina (inibidor das DNMT) induziu um ligeiro aumento na expressão do STEAP1 (três vezes em comparação com o grupo de controlo, p<0.01), enquanto que o tratamento com ambos os inibidores 5-Aza-2’-deoxicitidina e TSA (inibidor das HDAC) induziu um aumento acentuado na expressão do STEAP1 (quinze vezes relativamente ao grupo de controlo, p<0.001). A diferença no padrão de metilação do STEAP1 entre as células LNCaP e PNT1A, juntamente com o aumento da expressão do STEAP1 em resposta ao tratamento com os inibidores de HDACs e DNMTs, indica que a expressão génica do STEAP1 parece ser regulada por mecanismos epigenéticos.Batista, Cláudio Jorge MaiaLemos, Manuel Carlos Loureiro deuBibliorumSousa, Inês Margarida Marques de2018-11-05T14:43:17Z2016-11-102016-10-102016-11-10T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10400.6/6289TID:201771195enginfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-01-16T11:49:22ZPortal AgregadorONG |
dc.title.none.fl_str_mv |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
title |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
spellingShingle |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells Sousa, Inês Margarida Marques de Cancro da Próstata Epigenética Genética Steap1 Domínio/Área Científica::Engenharia e Tecnologia::Engenharia Química |
title_short |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
title_full |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
title_fullStr |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
title_full_unstemmed |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
title_sort |
Genetic and epigenetic mechanisms involved in regulation of STEAP1 gene expression in LNCaP prostate cancer cells |
author |
Sousa, Inês Margarida Marques de |
author_facet |
Sousa, Inês Margarida Marques de |
author_role |
author |
dc.contributor.none.fl_str_mv |
Batista, Cláudio Jorge Maia Lemos, Manuel Carlos Loureiro de uBibliorum |
dc.contributor.author.fl_str_mv |
Sousa, Inês Margarida Marques de |
dc.subject.por.fl_str_mv |
Cancro da Próstata Epigenética Genética Steap1 Domínio/Área Científica::Engenharia e Tecnologia::Engenharia Química |
topic |
Cancro da Próstata Epigenética Genética Steap1 Domínio/Área Científica::Engenharia e Tecnologia::Engenharia Química |
description |
Prostate cancer is the second most frequently diagnosed type of cancer and the fifth leading cause of cancer death in men worldwide. Prostate carcinogenesis is characterized by progressive alterations in genetic and epigenetic mechanisms that deregulate gene expression. The Six Transmembrane Epithelial Antigen of the Prostate 1 (STEAP1) gene encodes a protein with six transmembrane domains. In normal tissues, STEAP1 expression is very low but is overexpressed in several human cancers, mainly in prostate cancer. Some studies have indicated that STEAP1 overexpression seems to promote cell growth, suggesting that STEAP1 may act as an oncogene. Previous studies demonstrated that STEAP1 mRNA and protein have higher stability in LNCaP prostate cancer cell lines when compared with PNT1A non-neoplastic prostate cell lines, possibly due to post-transcriptional and post-translational modifications. However, these alterations do not justify the overexpression of STEAP1 in tumor cells, suggesting that other mechanisms may be involved. Therefore, the aim of this study was to explore the hypothesis that genetic and / or epigenetic alterations may be involved in overexpression of STEAP1. In order to evaluate genetic alterations in the STEAP1 gene sequence, the promoter region of STEAP1 in LNCaP and PNT1A cells was sequenced. To study the involvement of epigenetic mechanisms, the methylation patterns of STEAP1 in PNT1A and LNCaP cells were compared. In addition, the effect of treatment with DNA methyltransferases (DNMT) and histone deacetylases (HDAC) inhibitors on STEAP1 mRNA expression in PNT1A cells was evaluated. The sequence analysis of the promoter region of STEAP1 revealed some differences in both PNT1A and LNCaP cells when compared with the available genomic sequence. In silico analysis of the identified variants revealed several alterations in the transcription factors (TF) that can bind to each allelic variant including the binding of transcriptional activators to the altered allele of the variants. The analysis of the methylation pattern of STEAP1 gene in PNT1A and LNCaP cells showed differences in the promoter region near the transcription start site. The treatment with 5-Aza-2’-deoxycytidine (DNMT inhibitor) induced a slight increase in STEAP1 mRNA expression (3 fold-variation in comparison with control group, p<0.01) while the treatment with both 5-Aza-2’-deoxycytidine and TSA (HDAC inhibitor) induced a marked increase in STEAP1 mRNA expression (15 fold-variation relatively to control, p<0.001). The difference in the methylation pattern of STEAP1 between PNT1A and LNCaP cells, along with the increased STEAP1 mRNA expression in response to DNMT and HDAC inhibitors, indicates that STEAP1 gene expression seems to be regulated by epigenetic mechanisms. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-11-10 2016-10-10 2016-11-10T00:00:00Z 2018-11-05T14:43:17Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.6/6289 TID:201771195 |
url |
http://hdl.handle.net/10400.6/6289 |
identifier_str_mv |
TID:201771195 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
|
repository.mail.fl_str_mv |
|
_version_ |
1777301803611717632 |