Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

Detalhes bibliográficos
Autor(a) principal: Liu, Yang
Data de Publicação: 2019
Outros Autores: Johnson, Matthew G., Cox, Cymon, Medina, Rafael, Devos, Nicolas, Vanderpoorten, Alain, Hedenäs, Lars, Bell, Neil E., Shevock, James R., Aguero, Blanka, Quandt, Dietmar, Wickett, Norman J., Shaw, A. Jonathan, Goffinet, B.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/12473
Resumo: Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least 400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive early extinctions, late radiations, limited morphological variation, and conflicting signal among previously used markers. Here, we present phylogenetic reconstructions based on complete organellar exomes and a comparable set of nuclear genes for this major lineage of land plants. Our analysis of 142 species representing 29 of the 30 moss orders reveals that relative average rates of non-synonymous substitutions in nuclear versus plastid genes are much higher in mosses than in seed plants, consistent with the emerging concept of evolutionary dynamism in mosses. Our results highlight the evolutionary significance of taxa with reduced morphologies, shed light on the relative tempo and mechanisms underlying major cladogenic events, and suggest hypotheses for the relationships and delineation of moss orders.
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spelling Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomesMosses are a highly diverse lineage of land plants, whose diversification, spanning at least 400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive early extinctions, late radiations, limited morphological variation, and conflicting signal among previously used markers. Here, we present phylogenetic reconstructions based on complete organellar exomes and a comparable set of nuclear genes for this major lineage of land plants. Our analysis of 142 species representing 29 of the 30 moss orders reveals that relative average rates of non-synonymous substitutions in nuclear versus plastid genes are much higher in mosses than in seed plants, consistent with the emerging concept of evolutionary dynamism in mosses. Our results highlight the evolutionary significance of taxa with reduced morphologies, shed light on the relative tempo and mechanisms underlying major cladogenic events, and suggest hypotheses for the relationships and delineation of moss orders.S National Science Foundation DEB-1240045 DEB-1239992 DEB-1239980 Fundacao para a Ciencia e a Technologia (FCT), Portugal PTDC/BIA-EVF/1499/2014 National Natural Science Foundation of China 31470314 Scottish Government's Rural and Environment Science and Analytical Services Division DEB-1146168Nature Publishing GroupSapientiaLiu, YangJohnson, Matthew G.Cox, CymonMedina, RafaelDevos, NicolasVanderpoorten, AlainHedenäs, LarsBell, Neil E.Shevock, James R.Aguero, BlankaQuandt, DietmarWickett, Norman J.Shaw, A. JonathanGoffinet, B.2019-04-15T09:12:22Z20192019-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/12473eng2041-172310.1038/s41467-019-09454-winfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:24:27ZPortal AgregadorONG
dc.title.none.fl_str_mv Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
title Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
spellingShingle Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Liu, Yang
title_short Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
title_full Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
title_fullStr Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
title_full_unstemmed Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
title_sort Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
author Liu, Yang
author_facet Liu, Yang
Johnson, Matthew G.
Cox, Cymon
Medina, Rafael
Devos, Nicolas
Vanderpoorten, Alain
Hedenäs, Lars
Bell, Neil E.
Shevock, James R.
Aguero, Blanka
Quandt, Dietmar
Wickett, Norman J.
Shaw, A. Jonathan
Goffinet, B.
author_role author
author2 Johnson, Matthew G.
Cox, Cymon
Medina, Rafael
Devos, Nicolas
Vanderpoorten, Alain
Hedenäs, Lars
Bell, Neil E.
Shevock, James R.
Aguero, Blanka
Quandt, Dietmar
Wickett, Norman J.
Shaw, A. Jonathan
Goffinet, B.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Liu, Yang
Johnson, Matthew G.
Cox, Cymon
Medina, Rafael
Devos, Nicolas
Vanderpoorten, Alain
Hedenäs, Lars
Bell, Neil E.
Shevock, James R.
Aguero, Blanka
Quandt, Dietmar
Wickett, Norman J.
Shaw, A. Jonathan
Goffinet, B.
description Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least 400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive early extinctions, late radiations, limited morphological variation, and conflicting signal among previously used markers. Here, we present phylogenetic reconstructions based on complete organellar exomes and a comparable set of nuclear genes for this major lineage of land plants. Our analysis of 142 species representing 29 of the 30 moss orders reveals that relative average rates of non-synonymous substitutions in nuclear versus plastid genes are much higher in mosses than in seed plants, consistent with the emerging concept of evolutionary dynamism in mosses. Our results highlight the evolutionary significance of taxa with reduced morphologies, shed light on the relative tempo and mechanisms underlying major cladogenic events, and suggest hypotheses for the relationships and delineation of moss orders.
publishDate 2019
dc.date.none.fl_str_mv 2019-04-15T09:12:22Z
2019
2019-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/12473
url http://hdl.handle.net/10400.1/12473
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2041-1723
10.1038/s41467-019-09454-w
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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