Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters

Detalhes bibliográficos
Autor(a) principal: Duarte,Marcelo de Almeida
Data de Publicação: 2013
Outros Autores: Alvarenga,André Victor, Azevedo,Carolina Maria, Calas,Maria Julia Gregório, Infantosi,Antonio Fernando Catelli, Pereira,Wagner Coelho de Albuquerque
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista Brasileira de Engenharia Biomédica (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007
Resumo: INTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection.
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spelling Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filtersSegmentationMammographyMathematical morphologyOtsu's methodMicrocalcificationsBreast cancerINTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection.SBEB - Sociedade Brasileira de Engenharia Biomédica2013-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007Revista Brasileira de Engenharia Biomédica v.29 n.4 2013reponame:Revista Brasileira de Engenharia Biomédica (Online)instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)instacron:SBEB10.4322/rbeb.2013.037info:eu-repo/semantics/openAccessDuarte,Marcelo de AlmeidaAlvarenga,André VictorAzevedo,Carolina MariaCalas,Maria Julia GregórioInfantosi,Antonio Fernando CatelliPereira,Wagner Coelho de Albuquerqueeng2015-05-19T00:00:00Zoai:scielo:S1517-31512013000400007Revistahttp://www.scielo.br/rbebONGhttps://old.scielo.br/oai/scielo-oai.php||rbeb@rbeb.org.br1984-77421517-3151opendoar:2015-05-19T00:00Revista Brasileira de Engenharia Biomédica (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)false
dc.title.none.fl_str_mv Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
title Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
spellingShingle Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
Duarte,Marcelo de Almeida
Segmentation
Mammography
Mathematical morphology
Otsu's method
Microcalcifications
Breast cancer
title_short Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
title_full Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
title_fullStr Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
title_full_unstemmed Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
title_sort Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters
author Duarte,Marcelo de Almeida
author_facet Duarte,Marcelo de Almeida
Alvarenga,André Victor
Azevedo,Carolina Maria
Calas,Maria Julia Gregório
Infantosi,Antonio Fernando Catelli
Pereira,Wagner Coelho de Albuquerque
author_role author
author2 Alvarenga,André Victor
Azevedo,Carolina Maria
Calas,Maria Julia Gregório
Infantosi,Antonio Fernando Catelli
Pereira,Wagner Coelho de Albuquerque
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Duarte,Marcelo de Almeida
Alvarenga,André Victor
Azevedo,Carolina Maria
Calas,Maria Julia Gregório
Infantosi,Antonio Fernando Catelli
Pereira,Wagner Coelho de Albuquerque
dc.subject.por.fl_str_mv Segmentation
Mammography
Mathematical morphology
Otsu's method
Microcalcifications
Breast cancer
topic Segmentation
Mammography
Mathematical morphology
Otsu's method
Microcalcifications
Breast cancer
description INTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection.
publishDate 2013
dc.date.none.fl_str_mv 2013-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512013000400007
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dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.4322/rbeb.2013.037
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dc.publisher.none.fl_str_mv SBEB - Sociedade Brasileira de Engenharia Biomédica
publisher.none.fl_str_mv SBEB - Sociedade Brasileira de Engenharia Biomédica
dc.source.none.fl_str_mv Revista Brasileira de Engenharia Biomédica v.29 n.4 2013
reponame:Revista Brasileira de Engenharia Biomédica (Online)
instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)
instacron:SBEB
instname_str Sociedade Brasileira de Engenharia Biomédica (SBEB)
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